Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain von Mo, Alisa, Mukamel, Eran A., Davis, Fred P., Luo, Chongyuan, Henry, Gilbert L., Picard, Serge, Urich, Mark A., Nery, Joseph R., Sejnowski, Terrence J., Lister, Ryan, Eddy, Sean R., Ecker, Joseph R., Nathans, Jeremy

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Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape von O’Malley, Ronan C., Huang, Shao-shan Carol, Song, Liang, Lewsey, Mathew G., Bartlett, Anna, Nery, Joseph R., Galli, Mary, Gallavotti, Andrea, Ecker, Joseph R.

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Molecular Criteria for Defining the Naive Human Pluripotent State von Theunissen, Thorold W., Friedli, Marc, He, Yupeng, Planet, Evarist, O’Neil, Ryan C., Markoulaki, Styliani, Pontis, Julien, Wang, Haoyi, Iouranova, Alexandra, Imbeault, Michaël, Duc, Julien, Cohen, Malkiel A., Wert, Katherine J., Castanon, Rosa, Zhang, Zhuzhu, Huang, Yanmei, Nery, Joseph R., Drotar, Jesse, Lungjangwa, Tenzin, Trono, Didier, Ecker, Joseph R., Jaenisch, Rudolf

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Principles of Fluorescence Spectroscopy von Lakowicz, Joseph R

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Dynamic DNA methylation reconfiguration during seed development and germination von Kawakatsu, Taiji, Nery, Joseph R, Castanon, Rosa, Ecker, Joseph R

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Scanning Electron Microscopy and X-Ray Microanalysis von Goldstein, Joseph I, Newbury, Dale E, Michael, Joseph R, Ritchie, Nicholas W. M, Scott, John Henry J, Joy, David C

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Integration of omic networks in a developmental atlas of maize von Walley, Justin W., Sartor, Ryan C., Shen, Zhouxin, Schmitz, Robert J., Wu, Kevin J., Urich, Mark A., Nery, Joseph R., Smith, Laurie G., Schnable, James C., Ecker, Joseph R., Briggs, Steven P.

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A transcription factor hierarchy defines an environmental stress response network von Song, Liang, Huang, Shao-shan Carol, Wise, Aaron, Castanon, Rosa, Nery, Joseph R., Chen, Huaming, Watanabe, Marina, Thomas, Jerushah, Bar-Joseph, Ziv, Ecker, Joseph R.

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Mapping genome-wide transcription-factor binding sites using DAP-seq von Bartlett, Anna, O'Malley, Ronan C, Huang, Shao-shan Carol, Galli, Mary, Nery, Joseph R, Gallavotti, Andrea, Ecker, Joseph R

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The complex architecture and epigenomic impact of plant T-DNA insertions von Jupe, Florian, Rivkin, Angeline C, Michael, Todd P, Zander, Mark, Motley, S Timothy, Sandoval, Justin P, Slotkin, R Keith, Chen, Huaming, Castanon, Rosa, Nery, Joseph R, Ecker, Joseph R

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Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light von Pedmale, Ullas V., Huang, Shao-shan Carol, Zander, Mark, Cole, Benjamin J., Hetzel, Jonathan, Ljung, Karin, Reis, Pedro A.B., Sridevi, Priya, Nito, Kazumasa, Nery, Joseph R., Ecker, Joseph R., Chory, Joanne

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Global Epigenomic Reconfiguration During Mammalian Brain Development von Lister, Ryan, Mukamel, Eran A., Nery, Joseph R., Urich, Mark, Puddifoot, Clare A., Johnson, Nicholas D., Lucero, Jacinta, Huang, Yun, Dwork, Andrew J., Schultz, Matthew D., Yu, Miao, Tonti-Filippini, Julian, Heyn, Holger, Hu, Shijun, Wu, Joseph C., Rao, Anjana, Esteller, Manel, He, Chuan, Haghighi, Fatemeh G., Sejnowski, Terrence J., Behrens, M. Margarita, Ecker, Joseph R.

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MethylC-seq library preparation for base-resolution whole-genome bisulfite sequencing von Urich, Mark A, Nery, Joseph R, Lister, Ryan, Schmitz, Robert J, Ecker, Joseph R

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Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex von Luo, Chongyuan, Keown, Christopher L., Kurihara, Laurie, Zhou, Jingtian, He, Yupeng, Li, Junhao, Castanon, Rosa, Lucero, Jacinta, Nery, Joseph R., Sandoval, Justin P., Bui, Brian, Sejnowski, Terrence J., Harkins, Timothy T., Mukamel, Eran A., Behrens, M. Margarita, Ecker, Joseph R.

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Widespread dynamic DNA methylation in response to biotic stress von Dowen, Robert H, Pelizzola, Mattia, Schmitz, Robert J, Lister, Ryan, Dowen, Jill M, Nery, Joseph R, Dixon, Jack E, Ecker, Joseph R

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Comparison of the transcriptional landscapes between human and mouse tissues von Lin, Shin, Lin, Yiing, Nery, Joseph R., Urich, Mark A., Breschi, Alessandra, Davis, Carrie A., Dobin, Alexander, Zaleski, Christopher, Beer, Michael A., Chapman, William C., Gingeras, Thomas R., Ecker, Joseph R., Snyder, Michael P.

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Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells von Lister, Ryan, Pelizzola, Mattia, Kida, Yasuyuki S., Hawkins, R. David, Nery, Joseph R., Hon, Gary, Antosiewicz-Bourget, Jessica, O’Malley, Ronan, Castanon, Rosa, Klugman, Sarit, Downes, Michael, Yu, Ruth, Stewart, Ron, Ren, Bing, Thomson, James A., Evans, Ronald M., Ecker, Joseph R.

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Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain von Luo, Chongyuan, Lancaster, Madeline A., Castanon, Rosa, Nery, Joseph R., Knoblich, Juergen A., Ecker, Joseph R.

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Leaf cell-specific and single-cell transcriptional profiling reveals a role for the palisade layer in UV light protection von Procko, Carl, Lee, Travis, Borsuk, Aleca, Bargmann, Bastiaan O R, Dabi, Tsegaye, Nery, Joseph R, Estelle, Mark, Baird, Lisa, O'Connor, Carolyn, Brodersen, Craig, Ecker, Joseph R, Chory, Joanne

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COVID-19 and the nervous system von Berger, Joseph R.

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