Tumor mutational burden is a determinant of immune-mediated survival in breast cancer von Thomas, Alexandra, Routh, Eric D., Pullikuth, Ashok, Jin, Guangxu, Su, Jing, Chou, Jeff W., Hoadley, Katherine A., Print, Cristin, Knowlton, Nick, Black, Michael A., Demaria, Sandra, Wang, Ena, Bedognetti, Davide, Jones, Wendell D., Mehta, Gaurav A., Gatza, Michael L., Perou, Charles M., Page, David B., Triozzi, Pierre, Miller, Lance D.

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A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages von Yu, Ying, Fuscoe, James C., Zhao, Chen, Guo, Chao, Jia, Meiwen, Qing, Tao, Bannon, Desmond I., Lancashire, Lee, Bao, Wenjun, Du, Tingting, Luo, Heng, Su, Zhenqiang, Jones, Wendell D., Moland, Carrie L., Branham, William S., Qian, Feng, Ning, Baitang, Li, Yan, Hong, Huixiao, Guo, Lei, Mei, Nan, Shi, Tieliu, Wang, Kevin Y., Wolfinger, Russell D., Nikolsky, Yuri, Walker, Stephen J., Duerksen-Hughes, Penelope, Mason, Christopher E., Tong, Weida, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Shi, Leming, Wang, Charles

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DNMT3b overexpression contributes to a hypermethylator phenotype in human breast cancer cell lines von Roll, J Devon, Rivenbark, Ashley G, Jones, Wendell D, Coleman, William B

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Technical reproducibility of genotyping SNP arrays used in genome-wide association studies von Hong, Huixiao, Xu, Lei, Liu, Jie, Jones, Wendell D, Su, Zhenqiang, Ning, Baitang, Perkins, Roger, Ge, Weigong, Miclaus, Kelci, Zhang, Li, Park, Kyunghee, Green, Bridgett, Han, Tao, Fang, Hong, Lambert, Christophe G, Vega, Silvia C, Lin, Simon M, Jafari, Nadereh, Czika, Wendy, Wolfinger, Russell D, Goodsaid, Federico, Tong, Weida, Shi, Leming

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Using RNA sample titrations to assess microarray platform performance and normalization techniques von Shippy, Richard, Fulmer-Smentek, Stephanie, Jensen, Roderick V, Jones, Wendell D, Wolber, Paul K, Johnson, Charles D, Pine, P Scott, Boysen, Cecilie, Guo, Xu, Chudin, Eugene, Sun, Yongming Andrew, Willey, James C, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Setterquist, Robert A, Wilson, Mike, Lucas, Anne Bergstrom, Novoradovskaya, Natalia, Papallo, Adam, Turpaz, Yaron, Baker, Shawn C, Warrington, Janet A, Shi, Leming, Herman, Damir

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Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA von Willey, James C., Morrison, Tom B., Austermiller, Bradley, Crawford, Erin L., Craig, Daniel J., Blomquist, Thomas M., Jones, Wendell D., Wali, Aminah, Lococo, Jennifer S., Haseley, Nathan, Richmond, Todd A., Novoradovskaya, Natalia, Kusko, Rebecca, Chen, Guangchun, Li, Quan-Zhen, Johann, Donald J., Deveson, Ira W., Mercer, Timothy R., Wu, Leihong, Xu, Joshua

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The international MAQC Society launches to enhance reproducibility of high-throughput technologies von Shi, Leming, Kusko, Rebecca, Wolfinger, Russell D, Haibe-Kains, Benjamin, Fischer, Matthias, Sansone, Susanna-Assunta, Mason, Christopher E, Furlanello, Cesare, Jones, Wendell D, Ning, Baitang, Tong, Weida

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Clonal lineage of high grade serous ovarian cancer in a patient with neurofibromatosis type 1 von Norris, Eric J., Jones, Wendell D., Surleac, Marius D., Petrescu, Andrei J., Destephanis, Darla, Zhang, Qing, Hamadeh, Issam, Kneisl, Jeffrey S., Livasy, Chad A., Ganapathi, Ram N., Tait, David L., Ganapathi, Mahrukh K.

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Impact of RNA-seq data analysis algorithms on gene expression estimation and downstream prediction von Tong, Li, Wu, Po-Yen, Phan, John H., Hassazadeh, Hamid R., Tong, Weida, Wang, May D.

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Microarray-Based Gene Expression Profiling for Molecular Classification of Breast Cancer and Identification of New Targets for Therapy von Sandhu, Rupninder, Parker, Joel S, Jones, Wendell D, Livasy, Chad A, Coleman, William B

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Increased expression of neurotensin in high grade serous ovarian carcinoma with evidence of serous tubal intraepithelial carcinoma von Norris, Eric J, Zhang, Qing, Jones, Wendell D, DeStephanis, Darla, Sutker, Ashley P, Livasy, Chad A, Ganapathi, Ram N, Tait, David L, Ganapathi, Mahrukh K

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Learning from microarray interlaboratory studies: measures of precision for gene expression von Duewer, David L, Jones, Wendell D, Reid, Laura H, Salit, Marc

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Expression profile of COL2A1 and the pseudogene SLC6A10P predicts tumor recurrence in high‐grade serous ovarian cancer von Ganapathi, Mahrukh K., Jones, Wendell D., Sehouli, Jalid, Michener, Chad M., Braicu, Ioana E., Norris, Eric J., Biscotti, Charles V., Vaziri, Susan A.J., Ganapathi, Ram N.

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RNA Immune Signatures from Pan-Cancer Analysis Are Prognostic for High-Grade Serous Ovarian Cancer and Other Female Cancers von Jones, Wendell D, Michener, Chad M, Biscotti, Charles, Braicu, Iona, Sehouli, Jalid, Ganapathi, Mahrukh K, Ganapathi, Ram N

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The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies von Shi, Leming, Jones, Wendell D, Jensen, Roderick V, Harris, Stephen C, Perkins, Roger G, Goodsaid, Federico M, Guo, Lei, Croner, Lisa J, Boysen, Cecilie, Fang, Hong, Qian, Feng, Amur, Shashi, Bao, Wenjun, Barbacioru, Catalin C, Bertholet, Vincent, Cao, Xiaoxi Megan, Chu, Tzu-Ming, Collins, Patrick J, Fan, Xiao-Hui, Frueh, Felix W, Fuscoe, James C, Guo, Xu, Han, Jing, Herman, Damir, Hong, Huixiao, Kawasaki, Ernest S, Li, Quan-Zhen, Luo, Yuling, Ma, Yunqing, Mei, Nan, Peterson, Ron L, Puri, Raj K, Shippy, Richard, Su, Zhenqiang, Sun, Yongming Andrew, Sun, Hongmei, Thorn, Brett, Turpaz, Yaron, Wang, Charles, Wang, Sue Jane, Warrington, Janet A, Willey, James C, Wu, Jie, Xie, Qian, Zhang, Liang, Zhang, Lu, Zhong, Sheng, Wolfinger, Russell D, Tong, Weida

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Blood-Borne RNA Correlates with Disease Activity and IFN-Stimulated Gene Expression in Systemic Lupus Erythematosus von Doedens, John R, Jones, Wendell D, Hill, Kay, Mason, Michael J, Gersuk, Vivian H, Mease, Philip J, Dall'Era, Maria, Aranow, Cynthia, Martin, Richard W, Cohen, Stanley B, Fleischmann, Roy M, Kivitz, Alan J, Burge, Daniel J, Chaussabel, Damien, Elkon, Keith B, Posada, James A

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Dysregulation of the epigenome in triple-negative breast cancers: Basal-like and claudin-low breast cancers express aberrant DNA hypermethylation von Roll, J. Devon, Rivenbark, Ashley G., Sandhu, Rupninder, Parker, Joel S., Jones, Wendell D., Carey, Lisa A., Livasy, Chad A., Coleman, William B.

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DNA methylation-dependent silencing of CST6 in human breast cancer cell lines von Rivenbark, Ashley G, Jones, Wendell D, Coleman, William B

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A B-Cell Gene Signature Correlates With the Extent of Gluten-Induced Intestinal Injury in Celiac Disease von Garber, Mitchell E, Saldanha, Alok, Parker, Joel S, Jones, Wendell D, Kaukinen, Katri, Laurila, Kaija, Lähdeaho, Marja-Leena, Khatri, Purvesh, Khosla, Chaitan, Adelman, Daniel C, Mäki, Markku

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Comparison of comparative genomic hybridization technologies across microarray platforms von Hester, Susan D, Reid, Laura, Nowak, Norma, Jones, Wendell D, Parker, Joel S, Knudtson, Kevin, Ward, William, Tiesman, Jay, Denslow, Nancy D

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