CancerMine: a literature-mined resource for drivers, oncogenes and tumor suppressors in cancer von Lever, Jake, Zhao, Eric Y., Grewal, Jasleen, Jones, Martin R., Jones, Steven J. M.

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Aberrant patterns of H3K4 and H3K27 histone lysine methylation occur across subgroups in medulloblastoma von Dubuc, Adrian M., Remke, Marc, Korshunov, Andrey, Northcott, Paul A., Zhan, Shing H., Mendez-Lago, Maria, Kool, Marcel, Jones, David T. W., Unterberger, Alexander, Morrissy, A. Sorana, Shih, David, Peacock, John, Ramaswamy, Vijay, Rolider, Adi, Wang, Xin, Witt, Hendrik, Hielscher, Thomas, Hawkins, Cynthia, Vibhakar, Rajeev, Croul, Sidney, Rutka, James T., Weiss, William A., Jones, Steven J. M., Eberhart, Charles G., Marra, Marco A., Pfister, Stefan M., Taylor, Michael D.

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Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay von Roach, Michael J, Johnson, Daniel L, Bohlmann, Joerg, van Vuuren, Hennie J J, Jones, Steven J M, Pretorius, Isak S, Schmidt, Simon A, Borneman, Anthony R

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Megabase-scale methylation phasing using nanopore long reads and NanoMethPhase von Akbari, Vahid, Garant, Jean-Michel, O'Neill, Kieran, Pandoh, Pawan, Moore, Richard, Marra, Marco A, Hirst, Martin, Jones, Steven J M

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Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak von Gardy, Jennifer L, Johnston, James C, Sui, Shannan J. Ho, Cook, Victoria J, Shah, Lena, Brodkin, Elizabeth, Rempel, Shirley, Moore, Richard, Zhao, Yongjun, Holt, Robert, Varhol, Richard, Birol, Inanc, Lem, Marcus, Sharma, Meenu K, Elwood, Kevin, Jones, Steven J.M, Brinkman, Fiona S.L, Brunham, Robert C, Tang, Patrick

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Assembling millions of short DNA sequences using SSAKE von Warren, René L., Sutton, Granger G., Jones, Steven J. M., Holt, Robert A.

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A computational approach to finding novel targets for existing drugs von Li, Yvonne Y, An, Jianghong, Jones, Steven J M

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Conserved role of intragenic DNA methylation in regulating alternative promoters von Maunakea, Alika K., Nagarajan, Raman P., Bilenky, Mikhail, Ballinger, Tracy J., D’Souza, Cletus, Fouse, Shaun D., Johnson, Brett E., Hong, Chibo, Nielsen, Cydney, Zhao, Yongjun, Turecki, Gustavo, Delaney, Allen, Varhol, Richard, Thiessen, Nina, Shchors, Ksenya, Heine, Vivi M., Rowitch, David H., Xing, Xiaoyun, Fiore, Chris, Schillebeeckx, Maximiliaan, Jones, Steven J. M., Haussler, David, Marra, Marco A., Hirst, Martin, Wang, Ting, Costello, Joseph F.

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FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology von Fejes, Anthony P., Robertson, Gordon, Bilenky, Mikhail, Varhol, Richard, Bainbridge, Matthew, Jones, Steven J. M.

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Improved measures for evolutionary conservation that exploit taxonomy distances von Malhis, Nawar, Jones, Steven J. M., Gsponer, Jörg

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Text-mining clinically relevant cancer biomarkers for curation into the CIViC database von Lever, Jake, Jones, Martin R, Danos, Arpad M, Krysiak, Kilannin, Bonakdar, Melika, Grewal, Jasleen K, Culibrk, Luka, Griffith, Obi L, Griffith, Malachi, Jones, Steven J M

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Mutations in EZH2 Cause Weaver Syndrome von Gibson, William T., Hood, Rebecca L., Zhan, Shing Hei, Bulman, Dennis E., Fejes, Anthony P., Moore, Richard, Mungall, Andrew J., Eydoux, Patrice, Babul-Hirji, Riyana, An, Jianghong, Marra, Marco A., Chitayat, David, Boycott, Kym M., Weaver, David D., Jones, Steven J.M.

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Hive plots—rational approach to visualizing networks von KRZYWINSKI, Martin, BIROL, Inanc, JONES, Steven J. M, MARRA, Marco A

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VOLTA: an enVironment-aware cOntrastive ceLl represenTation leArning for histopathology von Nakhli, Ramin, Rich, Katherine, Zhang, Allen, Darbandsari, Amirali, Shenasa, Elahe, Hadjifaradji, Amir, Thiessen, Sidney, Milne, Katy, Jones, Steven J. M., McAlpine, Jessica N., Nelson, Brad H., Gilks, C. Blake, Farahani, Hossein, Bashashati, Ali

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Whole genome and transcriptome integrated analyses guide clinical care of pediatric poor prognosis cancers von Deyell, Rebecca J., Shen, Yaoqing, Titmuss, Emma, Dixon, Katherine, Williamson, Laura M., Pleasance, Erin, Nelson, Jessica M. T., Abbasi, Sanna, Krzywinski, Martin, Armstrong, Linlea, Bonakdar, Melika, Ch’ng, Carolyn, Chuah, Eric, Dunham, Chris, Fok, Alexandra, Jones, Martin, Lee, Anna F., Ma, Yussanne, Moore, Richard A., Mungall, Andrew J., Mungall, Karen L., Rogers, Paul C., Schrader, Kasmintan A., Virani, Alice, Wee, Kathleen, Young, Sean S., Zhao, Yongjun, Jones, Steven J. M., Laskin, Janessa, Marra, Marco A., Rassekh, Shahrad R.

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De novo transcriptome assembly with ABySS von Birol, Inanç, Jackman, Shaun D., Nielsen, Cydney B., Qian, Jenny Q., Varhol, Richard, Stazyk, Greg, Morin, Ryan D., Zhao, Yongjun, Hirst, Martin, Schein, Jacqueline E., Horsman, Doug E., Connors, Joseph M., Gascoyne, Randy D., Marra, Marco A., Jones, Steven J. M.

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JAGuaR: junction alignments to genome for RNA-seq reads von Butterfield, Yaron S, Kreitzman, Maayan, Thiessen, Nina, Corbett, Richard D, Li, Yisu, Pang, Johnson, Ma, Yussanne P, Jones, Steven J M, Birol, İnanç

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Preclinical activity of VX-787, a first-in-class, orally bioavailable inhibitor of the influenza virus polymerase PB2 subunit von Byrn, Randal A, Jones, Steven M, Bennett, Hamilton B, Bral, Chris, Clark, Michael P, Jacobs, Marc D, Kwong, Ann D, Ledeboer, Mark W, Leeman, Joshua R, McNeil, Colleen F, Murcko, Mark A, Nezami, Azin, Perola, Emanuele, Rijnbrand, Rene, Saxena, Kumkum, Tsai, Alice W, Zhou, Yi, Charifson, Paul S

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Pathogenesis and Immune Response of Crimean-Congo Hemorrhagic Fever Virus in a STAT-1 Knockout Mouse Model von BENTE, Dennis A, ALIMONTI, Judie B, SHIEH, Wun-Ju, CAMUS, Gaëlle, STRÖHER, Ute, ZAKI, Sherif, JONES, Steven M

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AI-based histopathology image analysis reveals a distinct subset of endometrial cancers von Darbandsari, Amirali, Farahani, Hossein, Asadi, Maryam, Wiens, Matthew, Cochrane, Dawn, Khajegili Mirabadi, Ali, Jamieson, Amy, Farnell, David, Ahmadvand, Pouya, Douglas, Maxwell, Leung, Samuel, Abolmaesumi, Purang, Jones, Steven J. M., Talhouk, Aline, Kommoss, Stefan, Gilks, C. Blake, Huntsman, David G., Singh, Naveena, McAlpine, Jessica N., Bashashati, Ali

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