Meta- and Orthogonal Integration of Influenza “OMICs” Data Defines a Role for UBR4 in Virus Budding von Tripathi, Shashank, Pohl, Marie O., Zhou, Yingyao, Rodriguez-Frandsen, Ariel, Wang, Guojun, Stein, David A., Moulton, Hong M., DeJesus, Paul, Che, Jianwei, Mulder, Lubbertus C.F., Yángüez, Emilio, Andenmatten, Dario, Pache, Lars, Manicassamy, Balaji, Albrecht, Randy A., Gonzalez, Maria G., Nguyen, Quy, Brass, Abraham, Elledge, Stephen, White, Michael, Shapira, Sagi, Hacohen, Nir, Karlas, Alexander, Meyer, Thomas F., Shales, Michael, Gatorano, Andre, Johnson, Jeffrey R., Jang, Gwen, Johnson, Tasha, Verschueren, Erik, Sanders, Doug, Krogan, Nevan, Shaw, Megan, König, Renate, Stertz, Silke, García-Sastre, Adolfo, Chanda, Sumit K.

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Global Mapping of Herpesvirus-Host Protein Complexes Reveals a Transcription Strategy for Late Genes von Davis, Zoe H., Verschueren, Erik, Jang, Gwendolyn M., Kleffman, Kevin, Johnson, Jeffrey R., Park, Jimin, Von Dollen, John, Maher, M. Cyrus, Johnson, Tasha, Newton, William, Jäger, Stefanie, Shales, Michael, Horner, Julie, Hernandez, Ryan D., Krogan, Nevan J., Glaunsinger, Britt A.

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NF-κB-Activating Complex Engaged in Response to EGFR Oncogene Inhibition Drives Tumor Cell Survival and Residual Disease in Lung Cancer von Blakely, Collin M., Pazarentzos, Evangelos, Olivas, Victor, Asthana, Saurabh, Yan, Jenny Jiacheng, Tan, Irena, Hrustanovic, Gorjan, Chan, Elton, Lin, Luping, Neel, Dana S., Newton, William, Bobb, Kathryn L., Fouts, Timothy R., Meshulam, Jeffrey, Gubens, Matthew A., Jablons, David M., Johnson, Jeffrey R., Bandyopadhyay, Sourav, Krogan, Nevan J., Bivona, Trever G.

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Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions von Morris, John H, Knudsen, Giselle M, Verschueren, Erik, Johnson, Jeffrey R, Cimermancic, Peter, Greninger, Alexander L, Pico, Alexander R

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A Combined Proteomics/Genomics Approach Links Hepatitis C Virus Infection with Nonsense-Mediated mRNA Decay von Ramage, Holly R., Kumar, G. Renuka, Verschueren, Erik, Johnson, Jeffrey R., Von Dollen, John, Johnson, Tasha, Newton, Billy, Shah, Priya, Horner, Julie, Krogan, Nevan J., Ott, Melanie

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Pharmacological dimerization and activation of the exchange factor eIF2B antagonizes the integrated stress response von Sidrauski, Carmela, Tsai, Jordan C, Kampmann, Martin, Hearn, Brian R, Vedantham, Punitha, Jaishankar, Priyadarshini, Sokabe, Masaaki, Mendez, Aaron S, Newton, Billy W, Tang, Edward L, Verschueren, Erik, Johnson, Jeffrey R, Krogan, Nevan J, Fraser, Christopher S, Weissman, Jonathan S, Renslo, Adam R, Walter, Peter

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Global Mapping of the Inc-Human Interactome Reveals that Retromer Restricts Chlamydia Infection von Mirrashidi, Kathleen M., Elwell, Cherilyn A., Verschueren, Erik, Johnson, Jeffrey R., Frando, Andrew, Von Dollen, John, Rosenberg, Oren, Gulbahce, Natali, Jang, Gwendolyn, Johnson, Tasha, Jäger, Stefanie, Gopalakrishnan, Anusha M., Sherry, Jessica, Dunn, Joe Dan, Olive, Andrew, Penn, Bennett, Shales, Michael, Cox, Jeffery S., Starnbach, Michael N., Derre, Isabelle, Valdivia, Raphael, Krogan, Nevan J., Engel, Joanne

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An Mtb-Human Protein-Protein Interaction Map Identifies a Switch between Host Antiviral and Antibacterial Responses von Penn, Bennett H., Netter, Zoe, Johnson, Jeffrey R., Von Dollen, John, Jang, Gwendolyn M., Johnson, Tasha, Ohol, Yamini M., Maher, Cyrus, Bell, Samantha L., Geiger, Kristina, Golovkine, Guillaume, Du, Xiaotang, Choi, Alex, Parry, Trevor, Mohapatra, Bhopal C., Storck, Matthew D., Band, Hamid, Chen, Chen, Jäger, Stefanie, Shales, Michael, Portnoy, Dan A., Hernandez, Ryan, Coscoy, Laurent, Cox, Jeffery S., Krogan, Nevan J.

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Chaperone-mediated reflux of secretory proteins to the cytosol during endoplasmic reticulum stress von Igbaria, Aeid, Merksamer, Philip I., Trusina, Ala, Tilahun, Firehiwot, Johnson, Jeffrey R., Brandman, Onn, Krogan, Nevan J., Weissman, Jonathan S., Papa, Feroz R.

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SUMO is a pervasive regulator of meiosis von Bhagwat, Nikhil R, Owens, Shannon N, Ito, Masaru, Boinapalli, Jay V, Poa, Philip, Ditzel, Alexander, Kopparapu, Srujan, Mahalawat, Meghan, Davies, Owen Richard, Collins, Sean R, Johnson, Jeffrey R, Krogan, Nevan J, Hunter, Neil

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A Chemical Proteomics Approach to Discover Regulators of Innate Immune Signaling von Kurland, Andrew P, Bonaventure, Boris, Johnson, Jeffrey R

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Dynamic BAF chromatin remodeling complex subunit inclusion promotes temporally distinct gene expression programs in cardiogenesis von Hota, Swetansu K, Johnson, Jeffrey R, Verschueren, Erik, Thomas, Reuben, Blotnick, Aaron M, Zhu, Yiwen, Sun, Xin, Pennacchio, Len A, Krogan, Nevan J, Bruneau, Benoit G

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Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus-Host Protein Network von Eckhardt, Manon, Zhang, Wei, Gross, Andrew M, Von Dollen, John, Johnson, Jeffrey R, Franks-Skiba, Kathleen E, Swaney, Danielle L, Johnson, Tasha L, Jang, Gwendolyn M, Shah, Priya S, Brand, Toni M, Archambault, Jacques, Kreisberg, Jason F, Grandis, Jennifer R, Ideker, Trey, Krogan, Nevan J

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SMYD2-Mediated Histone Methylation Contributes to HIV-1 Latency von Boehm, Daniela, Jeng, Mark, Camus, Gregory, Gramatica, Andrea, Schwarzer, Roland, Johnson, Jeffrey R., Hull, Philip A., Montano, Mauricio, Sakane, Naoki, Pagans, Sara, Godin, Robert, Deeks, Steven G., Krogan, Nevan J., Greene, Warner C., Ott, Melanie

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Centriolar satellites assemble centrosomal microcephaly proteins to recruit CDK2 and promote centriole duplication von Kodani, Andrew, Yu, Timothy W, Johnson, Jeffrey R, Jayaraman, Divya, Johnson, Tasha L, Al-Gazali, Lihadh, Sztriha, Lāszló, Partlow, Jennifer N, Kim, Hanjun, Krup, Alexis L, Dammermann, Alexander, Krogan, Nevan J, Walsh, Christopher A, Reiter, Jeremy F

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AFF1 is a ubiquitous P-TEFb partner to enable Tat extraction of P-TEFb from 7SK snRNP and formation of SECs for HIV transactivation von Lu, Huasong, Li, Zichong, Xue, Yuhua, Schulze-Gahmen, Ursula, Johnson, Jeffrey R, Krogan, Nevan J, Alber, Tom, Zhou, Qiang

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The RNA helicase DHX16 recognizes specific viral RNA to trigger RIG-I-dependent innate antiviral immunity von Hage, Adam, Bharaj, Preeti, van Tol, Sarah, Giraldo, Maria I., Gonzalez-Orozco, Maria, Valerdi, Karl M., Warren, Abbey N., Aguilera-Aguirre, Leopoldo, Xie, Xuping, Widen, Steven G., Moulton, Hong M., Lee, Benhur, Johnson, Jeffrey R., Krogan, Nevan J., García-Sastre, Adolfo, Shi, Pei-Yong, Freiberg, Alexander N., Rajsbaum, Ricardo

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Host Cell Interactome of HIV-1 Rev Includes RNA Helicases Involved in Multiple Facets of Virus Production von Naji, Souad, Ambrus, Géza, Cimermančič, Peter, Reyes, Jason R., Johnson, Jeffrey R., Filbrandt, Rebecca, Huber, Michael D., Vesely, Paul, Krogan, Nevan J., Yates, John R., Saphire, Andrew C., Gerace, Larry

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Two Accessory Proteins Govern MmpL3 Mycolic Acid Transport in Mycobacteria von Fay, Allison, Czudnochowski, Nadine, Rock, Jeremy M, Johnson, Jeffrey R, Krogan, Nevan J, Rosenberg, Oren, Glickman, Michael S

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SARS-CoV-2 hijacks p38β/MAPK11 to promote virus replication von Higgins, Christina A, Nilsson-Payant, Benjamin E, Bonaventure, Boris, Kurland, Andrew P, Ye, Chengjin, Yaron, Tomer M, Johnson, Jared L, Adhikary, Prithy, Golynker, Ilona, Panis, Maryline, Danziger, Oded, Rosenberg, Brad R, Cantley, Lewis C, Martínez-Sobrido, Luis, tenOever, Benjamin, Johnson, Jeffrey R

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