A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2 von Grifoni, Alba, Sidney, John, Zhang, Yun, Scheuermann, Richard H., Peters, Bjoern, Sette, Alessandro

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Peptide binding predictions for HLA DR, DP and DQ molecules von Wang, Peng, Sidney, John, Kim, Yohan, Sette, Alessandro, Lund, Ole, Nielsen, Morten, Peters, Bjoern

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T cells in atherosclerosis von Tse, Kevin, Tse, Harley, Sidney, John, Sette, Alex, Ley, Klaus

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Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction von Abelin, Jennifer G., Keskin, Derin B., Sarkizova, Siranush, Hartigan, Christina R., Zhang, Wandi, Sidney, John, Stevens, Jonathan, Lane, William, Zhang, Guang Lan, Eisenhaure, Thomas M., Clauser, Karl R., Hacohen, Nir, Rooney, Michael S., Carr, Steven A., Wu, Catherine J.

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Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines von Bui, Huynh-Hoa, Sidney, John, Li, Wei, Fusseder, Nicolas, Sette, Alessandro

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Dengue virus infection elicits highly polarized CX3CR1⁺ cytotoxic CD4⁺ T cells associated with protective immunity von Weiskopf, Daniela, Bangs, Derek J., Sidney, John, Kolla, Ravi V., De Silva, Aruna D., de Silva, Aravinda M., Crotty, Shane, Peters, Bjoern, Sette, Alessandro

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Are Ancient Durum Wheats Less Toxic to Celiac Patients? A Study of α-Gliadin from Graziella Ra and Kamut von Colomba, M. Stella, Gregorini, Armando

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A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach von Wang, Peng, Sidney, John, Dow, Courtney, Mothé, Bianca, Sette, Alessandro, Peters, Bjoern

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A large fraction of HLA class I ligands are proteasome-generated spliced peptides von Liepe, Juliane, Marino, Fabio, Sidney, John, Jeko, Anita, Bunting, Daniel E., Sette, Alessandro, Kloetzel, Peter M., Stumpf, Michael P. H., Heck, Albert J. R., Mishto, Michele

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Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior von Kim, Yohan, Sidney, John, Pinilla, Clemencia, Sette, Alessandro, Peters, Bjoern

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HLA class I supertypes: a revised and updated classification von Sidney, John, Peters, Bjoern, Frahm, Nicole, Brander, Christian, Sette, Alessandro

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Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity von Duan, Fei, Duitama, Jorge, Al Seesi, Sahar, Ayres, Cory M, Corcelli, Steven A, Pawashe, Arpita P, Blanchard, Tatiana, McMahon, David, Sidney, John, Sette, Alessandro, Baker, Brian M, Mandoiu, Ion I, Srivastava, Pramod K

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Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia von Rajasagi, Mohini, Shukla, Sachet A., Fritsch, Edward F., Keskin, Derin B., DeLuca, David, Carmona, Ellese, Zhang, Wandi, Sougnez, Carrie, Cibulskis, Kristian, Sidney, John, Stevenson, Kristen, Ritz, Jerome, Neuberg, Donna, Brusic, Vladimir, Gabriel, Stacey, Lander, Eric S., Getz, Gad, Hacohen, Nir, Wu, Catherine J.

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Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8⁺ T cells von Weiskopf, Daniela, Angelo, Michael A, de Azeredo, Elzinandes L, Sidney, John, Greenbaum, Jason A, Fernando, Anira N, Broadwater, Anne, Kolla, Ravi V, De Silva, Aruna D, de Silva, Aravinda M, Mattia, Kimberly A, Doranz, Benjamin J, Grey, Howard M, Shresta, Sujan, Peters, Bjoern, Sette, Alessandro

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High levels of dd‐cfDNA identify patients with TCMR 1A and borderline allograft rejection at elevated risk of graft injury von Stites, Erik, Kumar, Dhiren, Olaitan, Oyedolamu, John Swanson, Sidney, Leca, Nicolae, Weir, Matthew, Bromberg, Jonathan, Melancon, Joseph, Agha, Irfan, Fattah, Hasan, Alhamad, Tarek, Qazi, Yasir, Wiseman, Alexander, Gupta, Gaurav

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NetMHCpan, a method for MHC class I binding prediction beyond humans von Hoof, Ilka, Peters, Bjoern, Sidney, John, Pedersen, Lasse Eggers, Sette, Alessandro, Lund, Ole, Buus, Søren, Nielsen, Morten

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Automated benchmarking of peptide-MHC class I binding predictions von Trolle, Thomas, Metushi, Imir G, Greenbaum, Jason A, Kim, Yohan, Sidney, John, Lund, Ole, Sette, Alessandro, Peters, Bjoern, Nielsen, Morten

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Human Ebola virus infection results in substantial immune activation von McElroy, Anita K., Akondy, Rama S., Davis, Carl W., Ellebedy, Ali H., Mehta, Aneesh K., Kraft, Colleen S., Lyon, G. Marshall, Ribner, Bruce S., Varkey, Jay, Sidney, John, Sette, Alessandro, Campbell, Shelley, Ströher, Ute, Damon, Inger, Nichol, Stuart T., Spiropoulou, Christina F., Ahmed, Rafi

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Quantification of epitope abundance reveals the effect of direct and cross-presentation on influenza CTL responses von Wu, Ting, Guan, Jing, Handel, Andreas, Tscharke, David C., Sidney, John, Sette, Alessandro, Wakim, Linda M., Sng, Xavier Y. X., Thomas, Paul G., Croft, Nathan P., Purcell, Anthony W., La Gruta, Nicole L.

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Predicting HLA CD4 Immunogenicity in Human Populations von Dhanda, Sandeep Kumar, Karosiene, Edita, Edwards, Lindy, Grifoni, Alba, Paul, Sinu, Andreatta, Massimo, Weiskopf, Daniela, Sidney, John, Nielsen, Morten, Peters, Bjoern, Sette, Alessandro

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