A Whole-Cell Computational Model Predicts Phenotype from Genotype von Karr, Jonathan R., Sanghvi, Jayodita C., Macklin, Derek N., Gutschow, Miriam V., Jacobs, Jared M., Bolival, Benjamin, Assad-Garcia, Nacyra, Glass, John I., Covert, Markus W.

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Design and synthesis of a minimal bacterial genome von Hutchison, Clyde A., Chuang, Ray-Yuan, Noskov, Vladimir N., Assad-Garcia, Nacyra, Deerinck, Thomas J., Ellisman, Mark H., Gill, John, Kannan, Krishna, Karas, Bogumil J., Ma, Li, Pelletier, James F., Qi, Zhi-Qing, Richter, R. Alexander, Strychalski, Elizabeth A., Sun, Lijie, Suzuki, Yo, Tsvetanova, Billyana, Wise, Kim S., Smith, Hamilton O., Glass, John I., Merryman, Chuck, Gibson, Daniel G., Venter, J. Craig

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Technology used to build and transfer mammalian chromosomes von Brown, David M., Glass, John I.

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Designer diatom episomes delivered by bacterial conjugation von Karas, Bogumil J., Diner, Rachel E., Lefebvre, Stephane C., McQuaid, Jeff, Phillips, Alex P.R., Noddings, Chari M., Brunson, John K., Valas, Ruben E., Deerinck, Thomas J., Jablanovic, Jelena, Gillard, Jeroen T.F., Beeri, Karen, Ellisman, Mark H., Glass, John I., Hutchison III, Clyde A., Smith, Hamilton O., Venter, J. Craig, Allen, Andrew E., Dupont, Christopher L., Weyman, Philip D.

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Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome von Gibson, Daniel G, Glass, John I, Lartigue, Carole, Noskov, Vladimir N, Chuang, Ray-Yuan, Algire, Mikkel A, Benders, Gwynedd A, Montague, Michael G, Ma, Li, Moodie, Monzia M, Merryman, Chuck, Vashee, Sanjay, Krishnakumar, Radha, Assad-Garcia, Nacyra, Andrews-Pfannkoch, Cynthia, Denisova, Evgeniya A, Young, Lei, Qi, Zhi-Qing, Segall-Shapiro, Thomas H, Calvey, Christopher H, Parmar, Prashanth P, Hutchison, Clyde A. III, Smith, Hamilton O, Venter, J. Craig

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Essential metabolism for a minimal cell von Breuer, Marian, Earnest, Tyler M, Merryman, Chuck, Wise, Kim S, Sun, Lijie, Lynott, Michaela R, Hutchison, Clyde A, Smith, Hamilton O, Lapek, John D, Gonzalez, David J, de Crécy-Lagard, Valérie, Haas, Drago, Hanson, Andrew D, Labhsetwar, Piyush, Glass, John I, Luthey-Schulten, Zaida

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Cloning and sequencing analysis of whole Spiroplasma genome in yeast von Mizutani, Masaki, Omori, Sawako, Yamane, Noriko, Suzuki, Yo, Glass, John I, Chuang, Ray-Yuan, Fukatsu, Takema, Kakizawa, Shigeyuki

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The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples von Williamson, Shannon J, Rusch, Douglas B, Yooseph, Shibu, Halpern, Aaron L, Heidelberg, Karla B, Glass, John I, Andrews-Pfannkoch, Cynthia, Fadrosh, Douglas, Miller, Christopher S, Sutton, Granger, Frazier, Marvin, Venter, J Craig

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Essential Genes of a Minimal Bacterium von Glass, John I., Assad-Garcia, Nacyra, Alperovich, Nina, Yooseph, Shibu, Lewis, Matthew R., Maruf, Mahir, Hutchison, Clyde A., Smith, Hamilton O., Venter, J. Craig

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Genome Transplantation in Bacteria: Changing One Species to Another von Lartigue, Carole, Glass, John I, Alperovich, Nina, Pieper, Rembert, Parmar, Prashanth P, Hutchison, Clyde A. III, Smith, Hamilton O, Venter, J. Craig

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Rescue of Infectious Sindbis Virus by Yeast Spheroplast-Mammalian Cell Fusion von Ding, Lin, Brown, David M, Glass, John I

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Genome Sequence of Avery's Virulent Serotype 2 Strain D39 of Streptococcus pneumoniae and Comparison with That of Unencapsulated Laboratory Strain R6 von LANIE, Joel A, NG, Wai-Leung, KAZMIERCZAK, Krystyna M, ANDRZEJEWSKI, Tiffany M, DAVIDSEN, Tanja M, WAYNE, Kyle J, TETTELIN, Hervé, GLASS, John I, WINKLER, Malcolm E

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Detection and Characterization of Human Ureaplasma Species and Serovars by Real-Time PCR von Xiao, Li, Glass, John I, Paralanov, Vanya, Yooseph, Shibu, Cassell, Gail H, Duffy, Lynn B, Waites, Ken B

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Metabolite Damage and Damage Control in a Minimal Genome von Haas, Drago, Thamm, Antje M, Sun, Jiayi, Huang, Lili, Sun, Lijie, Beaudoin, Guillaume A W, Wise, Kim S, Lerma-Ortiz, Claudia, Bruner, Steven D, Breuer, Marian, Luthey-Schulten, Zaida, Lin, Jiusheng, Wilson, Mark A, Brown, Greg, Yakunin, Alexander F, Kurilyak, Inna, Folz, Jacob, Fiehn, Oliver, Glass, John I, Hanson, Andrew D, Henry, Christopher S, de Crécy-Lagard, Valérie

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A genome-scale metabolic reconstruction of Mycoplasma genitalium, iPS189 von Suthers, Patrick F, Dasika, Madhukar S, Kumar, Vinay Satish, Denisov, Gennady, Glass, John I, Maranas, Costas D

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Adaptive evolution of a minimal organism with a synthetic genome von Sandberg, Troy E., Wise, Kim S., Dalldorf, Christopher, Szubin, Richard, Feist, Adam M., Glass, John I., Palsson, Bernhard O.

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Extensive Horizontal Gene Transfer in Ureaplasmas from Humans Questions the Utility of Serotyping for Diagnostic Purposes von LI XIAO, PARALANOV, Vanya, GLASS, John I, DUFFY, Lynn B, ROBERTSON, Janet A, CASSELL, Gail H, CHEN, Yuying, WAITES, Ken B

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Comparative genome analysis of 19 Ureaplasma urealyticum and Ureaplasma parvum strains von Paralanov, Vanya, Lu, Jin, Duffy, Lynn B, Crabb, Donna M, Shrivastava, Susmita, Methé, Barbara A, Inman, Jason, Yooseph, Shibu, Xiao, Li, Cassell, Gail H, Waites, Ken B, Glass, John I

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Transfer RNA Misidentification Scrambles Sense Codon Recoding von Krishnakumar, Radha, Prat, Laure, Aerni, Hans-Rudolf, Ling, Jiqiang, Merryman, Chuck, Glass, John I., Rinehart, Jesse, Söll, Dieter

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Essence of life: essential genes of minimal genomes von Juhas, Mario, Eberl, Leo, Glass, John I

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