Robust edge-based biomarker discovery improves prediction of breast cancer metastasis von Adnan, Nahim, Lei, Chengwei, Ruan, Jianhua

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Characterization and identification of microRNA core promoters in four model species von Zhou, Xuefeng, Ruan, Jianhua, Wang, Guandong, Zhang, Weixiong

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Enhancer reprogramming driven by high-order assemblies of transcription factors promotes phenotypic plasticity and breast cancer endocrine resistance von Bi, Mingjun, Zhang, Zhao, Jiang, Yi-Zhou, Xue, Pengya, Wang, Hu, Lai, Zhao, Fu, Xiaoyong, De Angelis, Carmine, Gong, Yue, Gao, Zhen, Ruan, Jianhua, Jin, Victor X., Marangoni, Elisabetta, Montaudon, Elodie, Glass, Christopher K., Li, Wei, Huang, Tim Hui-Ming, Shao, Zhi-Ming, Schiff, Rachel, Chen, Lizhen, Liu, Zhijie

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A Network-Based Data Integration Approach to Support Drug Repurposing and Multi-Target Therapies in Triple Negative Breast Cancer von Vitali, Francesca, Cohen, Laurie D, Demartini, Andrea, Amato, Angela, Eterno, Vincenzo, Zambelli, Alberto, Bellazzi, Riccardo

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The regulatory repertoire of PLZF and SALL4 in undifferentiated spermatogonia von Lovelace, Dawn L, Gao, Zhen, Mutoji, Kazadi, Song, Yuntao Charlie, Ruan, Jianhua, Hermann, Brian P

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A general co-expression network-based approach to gene expression analysis: comparison and applications von Ruan, Jianhua, Dean, Angela K, Zhang, Weixiong

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Hematological and gene co-expression network analyses of high-risk beef cattle defines immunological mechanisms and biological complexes involved in bovine respiratory disease and... von Scott, Matthew A, Woolums, Amelia R, Swiderski, Cyprianna E, Finley, Abigail, Perkins, Andy D, Nanduri, Bindu, Karisch, Brandi B

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A top-performing algorithm for the DREAM3 gene expression prediction challenge von Ruan, Jianhua

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Alterations in the placental methylome with maternal obesity and evidence for metabolic regulation von Mitsuya, Kohzoh, Parker, Ashley N, Liu, Lu, Ruan, Jianhua, Vissers, Margreet C M, Myatt, Leslie

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Spatial mapping of single cells in the Drosophila embryo from transcriptomic data based on topological consistency [version 2; peer review: 2 approved] von Zand, Maryam, Ruan, Jianhua

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Manipulation of the Plant Host by the Geminivirus AC2/C2 Protein, a Central Player in the Infection Cycle von Guerrero, Jennifer, Regedanz, Elizabeth, Lu, Liu, Ruan, Jianhua, Bisaro, David M, Sunter, Garry

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Mutation of the conserved late element in geminivirus CP promoters abolishes Arabidopsis TCP24 transcription factor binding and decreases H3K27me3 levels on viral chromatin von Williams, Jacqueline, Regedanz, Elizabeth, Lucinda, Natalia, Nava Fereira, Alba Ruth, Lacatus, Gabriela, Berger, Mary, O'Connell, Nels, Coursey, Tami, Ruan, Jianhua, Bisaro, David M, Sunter, Garry

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A complex network approach reveals a pivotal substructure of genes linked to schizophrenia von Monaco, Alfonso, Monda, Anna, Amoroso, Nicola, Bertolino, Alessandro, Blasi, Giuseppe, Di Carlo, Pasquale, Papalino, Marco, Pergola, Giulio, Tangaro, Sabina, Bellotti, Roberto

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Logo2PWM: a tool to convert sequence logo to position weight matrix von Gao, Zhen, Liu, Lu, Ruan, Jianhua

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Variations in the transcriptome of Alzheimer's disease reveal molecular networks involved in cardiovascular diseases von Ray, Monika, Ruan, Jianhua, Zhang, Weixiong

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A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity von Lei, Chengwei, Ruan, Jianhua

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Parenclitic Network Analysis of Methylation Data for Cancer Identification von Karsakov, Alexander, Bartlett, Thomas, Ryblov, Artem, Meyerov, Iosif, Ivanchenko, Mikhail, Zaikin, Alexey

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A Feature Selection Algorithm to Compute Gene Centric Methylation from Probe Level Methylation Data von Baur, Brittany, Bozdag, Serdar

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Protein complex prediction via dense subgraphs and false positive analysis von Hernandez, Cecilia, Mella, Carlos, Navarro, Gonzalo, Olivera-Nappa, Alvaro, Araya, Jaime

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Comparison of attitudes toward disability and people with disability among caregivers, the public, and people with disability: findings from a cross-sectional survey von Zheng, Qiaolan, Tian, Qi, Hao, Chun, Gu, Jing, Tao, Jianting, Liang, Zuoyi, Chen, Xinlin, Fang, Jiqian, Ruan, Jianhua, Ai, Qiuxiang, Hao, Yuantao

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