Microbial functional pathways based on metatranscriptomic profiling enable effective saliva-based health assessments for precision wellness von Patridge, Eric, Gorakshakar, Anmol, Molusky, Matthew M., Ogundijo, Oyetunji, Janevski, Angel, Julian, Cristina, Hu, Lan, Vuyisich, Momchilo, Banavar, Guruduth

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Effective normalization for copy number variation detection from whole genome sequencing von Janevski, Angel, Varadan, Vinay, Kamalakaran, Sitharthan, Banerjee, Nilanjana, Dimitrova, Nevenka

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DNA methylation patterns in luminal breast cancers differ from non-luminal subtypes and can identify relapse risk independent of other clinical variables von Kamalakaran, Sitharthan, Varadan, Vinay, Giercksky Russnes, Hege E., Levy, Dan, Kendall, Jude, Janevski, Angel, Riggs, Michael, Banerjee, Nilanjana, Synnestvedt, Marit, Schlichting, Ellen, Kåresen, Rolf, Shama Prasada, K., Rotti, Harish, Rao, Ramachandra, Rao, Laxmi, Eric Tang, Man-Hung, Satyamoorthy, K., Lucito, Robert, Wigler, Michael, Dimitrova, Nevenka, Naume, Bjorn, Borresen-Dale, Anne-Lise, Hicks, James B.

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A microRNA panel to discriminate carcinomas from high-grade intraepithelial neoplasms in colonoscopy biopsy tissue von Wang, Shuyang, Wang, Lei, Bayaxi, Nayima, Li, Jian, Verhaegh, Wim, Janevski, Angel, Varadan, Vinay, Ren, Yiping, Merkle, Dennis, Meng, Xianxin, Gao, Xue, Wang, Huijun, Ren, Jiaqiang, Kuo, Winston Patrick, Dimitrova, Nevenka, Wu, Ying, Zhu, Hongguang

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PAPAyA: a platform for breast cancer biomarker signature discovery, evaluation and assessment von Janevski, Angel, Kamalakaran, Sitharthan, Banerjee, Nilanjana, Varadan, Vinay, Dimitrova, Nevenka

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A Faceted Query Engine Applied to Archaeology von Ross, Kenneth A., Janevski, Angel, Stoyanovich, Julia

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Brief‐exposure to preoperative bevacizumab reveals a TGF‐β signature predictive of response in HER2‐negative breast cancers von Varadan, Vinay, Kamalakaran, Sitharthan, Gilmore, Hannah, Banerjee, Nilanjana, Janevski, Angel, Miskimen, Kristy L.S., Williams, Nicole, Basavanhalli, Ajay, Madabhushi, Anant, Lezon‐Geyda, Kimberly, Bossuyt, Veerle, Lannin, Donald R., Abu‐Khalaf, Maysa, Sikov, William, Dimitrova, Nevenka, Harris, Lyndsay N.

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Brief-exposure to preoperative bevacizumab reveals a TGF-[beta] signature predictive of response in HER2-negative breast cancers von Varadan, Vinay, Kamalakaran, Sitharthan, Gilmore, Hannah, Banerjee, Nilanjana, Janevski, Angel, Miskimen, Kristy LS, Williams, Nicole, Basavanhalli, Ajay, Madabhushi, Anant, Lezon-Geyda, Kimberly, Bossuyt, Veerle, Lannin, Donald R, Abu-Khalaf, Maysa, Sikov, William, Dimitrova, Nevenka, Harris, Lyndsay N

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Translating next generation sequencing to practice: Opportunities and necessary steps von Kamalakaran, Sitharthan, Varadan, Vinay, Janevski, Angel, Banerjee, Nilanjana, Tuck, David, McCombie, W. Richard, Dimitrova, Nevenka, Harris, Lyndsay N.

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Abstract 4566: RNA-seq identifies a TGF-β signature that predicts response to preoperative bevacizumab in breast cancer von Varadan, Vinay, Miskimen, Kristy, Kamalakaran, Sitharthan, Janevski, Angel, Banerjee, Nilanjana, Williams, Nicole, Abu-Khalaf, Maysa, Sikov, William, Dimitrova, Nevenka, Harris, Lyndsay

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Abstract 1828: RNA-seq reveals association of pCR and changes in lncRNA expression in pre-operative bevacizumab treatment of breast cancer von Banerjee, Nilanjana, Varadan, Vinay, Kamalakaran, Sitharthan, Janevski, Angel, Miskimen, Kristy, Williams, Nicole, Abu-Khalaf, Maysa, Sikov, William, Harris, Lyndsay N., Dimitrova, Nevenka

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Abstract 70: A role for the chromatin remodeling protein CHD3 in ovarian cancer therapy response von Cutter, Noelle, Banerjee, Nila, Vigliotti, Michele, Janevski, Angel, Levine, Douglas, Dimitrova, Nevenka, Lucito, Robert

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TGFb signature at 2 weeks to predict response to preoperative therapy (PT) with bevacizumab (B) and chemotherapy (CT) in early breast cancer (EBC) von Williams, Nicole, Varadan, Vinay, Vadodkar, Aditi, Miskimen, Kristy, Gilmore, Hannah L., Beckloff, Nicholas, Edelheit, Simone, Prabhakar, Dhivya, Janevski, Angel, Banerjee, Nila, Kamalakaran, Sitharthan, Abu-Khalaf, Maysa M., Sikov, William M., Dimitrova, Nevenka, Harris, Lyndsay

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Next-generation RNA sequencing reveals transcriptomic changes after brief exposure to preoperative nab-paclitaxel, bevacizumab, and trastuzumab von Varadan, Vinay, Kamalakaran, Sitharthan, Janevski, Angel, Banerjee, Nila, Lezon-Geyda, Kimberly, Bossuyt, Veerle, Flowers-Poole, Dava, Sinclair, Natalie Faye, Abu-Khalaf, Maysa M., Sikov, William M., Dimitrova, Nevenka, Harris, Lyndsay

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AURAL ENHANCMENTS TO MEDICAL SYSTEMS von ZAGORCHEV, Lyubomir Georgiev, JANEVSKI, Angel

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Biomarkers based on sets of molecular signatures von Janevski, Angel, Varadan, Vinay, Banerjee, Nilanjana

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SYSTEM AND METHOD FOR CONTEXTUALIZED TRACKING OF THE PROGRESS OF A CLINICAL STUDY von Laudanovic Mladen, Janevski Angel

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DIAGNOSTIC GENETIC ANALYSIS USING VARIANT-DISEASE ASSOCIATION WITH PATIENT-SPECIFIC RELEVANCE ASSESSMENT von VARADAN, Vinay, DIMITROVA, Nevenka, KAMALAKARAN, Sitharthan, BANERJEE, Nilanjana, JANEVSKI, Angel

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Querying Faceted Databases von Ross, Kenneth A., Janevski, Angel

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RETROACTIVE EXTRACTION OF CLINICALLY RELEVANT INFORMATION FROM PATIENT SEQUENCING DATA FOR CLINICAL DECISION SUPPORT von VARADAN, Vinay, DIMITROVA, Nevenka, KAMALAKARAN, Sitharthan, BANERJEE, Nilanjana, JANEVSKI, Angel

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