QuPath: Open source software for digital pathology image analysis von Bankhead, Peter, Loughrey, Maurice B., Fernández, José A., Dombrowski, Yvonne, McArt, Darragh G., Dunne, Philip D., McQuaid, Stephen, Gray, Ronan T., Murray, Liam J., Coleman, Helen G., James, Jacqueline A., Salto-Tellez, Manuel, Hamilton, Peter W.

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Fusobacterium nucleatum and oral cancer: a critical review von McIlvanna, Emily, Linden, Gerard J, Craig, Stephanie G, Lundy, Fionnuala T, James, Jacqueline A

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Translation of tissue-based artificial intelligence into clinical practice: from discovery to adoption von Geaney, Alice, O’Reilly, Paul, Maxwell, Perry, James, Jacqueline A., McArt, Darragh, Salto-Tellez, Manuel

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Exploring the immune microenvironment in small bowel adenocarcinoma using digital image analysis von Sidi, Fatima Abdullahi, Bingham, Victoria, McQuaid, Stephen, Craig, Stephanie G, Turkington, Richard C, James, Jacqueline A, Humphries, Matthew P, Salto-Tellez, Manuel

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Swarm learning for decentralized artificial intelligence in cancer histopathology von Saldanha, Oliver Lester, Quirke, Philip, West, Nicholas P., James, Jacqueline A., Loughrey, Maurice B., Grabsch, Heike I., Salto-Tellez, Manuel, Alwers, Elizabeth, Cifci, Didem, Ghaffari Laleh, Narmin, Seibel, Tobias, Gray, Richard, Hutchins, Gordon G. A., Brenner, Hermann, van Treeck, Marko, Yuan, Tanwei, Brinker, Titus J., Chang-Claude, Jenny, Khader, Firas, Schuppert, Andreas, Luedde, Tom, Trautwein, Christian, Muti, Hannah Sophie, Foersch, Sebastian, Hoffmeister, Michael, Truhn, Daniel, Kather, Jakob Nikolas

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Identifying mismatch repair‐deficient colon cancer: near‐perfect concordance between immunohistochemistry and microsatellite instability testing in a large, population‐based series... von Loughrey, Maurice B, McGrath, Jason, Coleman, Helen G, Bankhead, Peter, Maxwell, Perry, McGready, Claire, Bingham, Victoria, Humphries, Matthew P, Craig, Stephanie G, McQuaid, Stephen, Salto‐Tellez, Manuel, James, Jacqueline A

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Digital pathology and artificial intelligence will be key to supporting clinical and academic cellular pathology through COVID-19 and future crises: the PathLAKE consortium perspec... von Browning, Lisa, Colling, Richard, Rakha, Emad, Rajpoot, Nasir, Rittscher, Jens, James, Jacqueline A, Salto-Tellez, Manuel, Snead, David R J, Verrill, Clare

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A robust multiplex immunofluorescence and digital pathology workflow for the characterisation of the tumour immune microenvironment von Viratham Pulsawatdi, Amélie, Craig, Stephanie G., Bingham, Victoria, McCombe, Kris, Humphries, Matthew P., Senevirathne, Seedevi, Richman, Susan D., Quirke, Phil, Campo, Leticia, Domingo, Enric, Maughan, Timothy S., James, Jacqueline A., Salto‐Tellez, Manuel

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Integrated tumor identification and automated scoring minimizes pathologist involvement and provides new insights to key biomarkers in breast cancer von Bankhead, Peter, Fernández, José A, McArt, Darragh G, Boyle, David P, Li, Gerald, Loughrey, Maurice B, Irwin, Gareth W, Harkin, D Paul, James, Jacqueline A, McQuaid, Stephen, Salto-Tellez, Manuel, Hamilton, Peter W

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Metastasis and Immune Evasion from Extracellular cGAMP Hydrolysis von Li, Jun, Duran, Mercedes A, Dhanota, Ninjit, Chatila, Walid K, Bettigole, Sarah E, Kwon, John, Sriram, Roshan K, Humphries, Matthew P, Salto-Tellez, Manuel, James, Jacqueline A, Hanna, Matthew G, Melms, Johannes C, Vallabhaneni, Sreeram, Litchfield, Kevin, Usaite, Ieva, Biswas, Dhruva, Bareja, Rohan, Li, Hao Wei, Martin, Maria Laura, Dorsaint, Princesca, Cavallo, Julie-Ann, Li, Peng, Pauli, Chantal, Gottesdiener, Lee, DiPardo, Benjamin J, Hollmann, Travis J, Merghoub, Taha, Wen, Hannah Y, Reis-Filho, Jorge S, Riaz, Nadeem, Su, Shin-San Michael, Kalbasi, Anusha, Vasan, Neil, Powell, Simon N, Wolchok, Jedd D, Elemento, Olivier, Swanton, Charles, Shoushtari, Alexander N, Parkes, Eileen E, Izar, Benjamin, Bakhoum, Samuel F

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Transformer-based biomarker prediction from colorectal cancer histology: A large-scale multicentric study von Wagner, Sophia J., Reisenbüchler, Daniel, West, Nicholas P., Niehues, Jan Moritz, Zhu, Jiefu, Foersch, Sebastian, Veldhuizen, Gregory Patrick, Quirke, Philip, Grabsch, Heike I., van den Brandt, Piet A., Hutchins, Gordon G.A., Richman, Susan D., Yuan, Tanwei, Langer, Rupert, Jenniskens, Josien C.A., Offermans, Kelly, Mueller, Wolfram, Gray, Richard, Gruber, Stephen B., Greenson, Joel K., Rennert, Gad, Bonner, Joseph D., Schmolze, Daniel, Jonnagaddala, Jitendra, Hawkins, Nicholas J., Ward, Robyn L., Morton, Dion, Seymour, Matthew, Magill, Laura, Nowak, Marta, Hay, Jennifer, Koelzer, Viktor H., Church, David N., Church, David, Domingo, Enric, Edwards, Joanne, Glimelius, Bengt, Gogenur, Ismail, Harkin, Andrea, Hay, Jen, Iveson, Timothy, Jaeger, Emma, Kelly, Caroline, Kerr, Rachel, Maka, Noori, Morgan, Hannah, Oien, Karin, Orange, Clare, Palles, Claire, Roxburgh, Campbell, Sansom, Owen, Saunders, Mark, Tomlinson, Ian, Matek, Christian, Geppert, Carol, Peng, Chaolong, Zhi, Cheng, Ouyang, Xiaoming, James, Jacqueline A., Loughrey, Maurice B., Salto-Tellez, Manuel, Brenner, Hermann, Hoffmeister, Michael, Truhn, Daniel, Schnabel, Julia A., Boxberg, Melanie, Peng, Tingying, Kather, Jakob Nikolas

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Immune status is prognostic for poor survival in colorectal cancer patients and is associated with tumour hypoxia von Craig, Stephanie G., Humphries, Matthew P., Alderdice, Matthew, Bingham, Victoria, Richman, Susan D., Loughrey, Maurice B., Coleman, Helen G., Viratham-Pulsawatdi, Amelie, McCombe, Kris, Murray, Graeme I., Blake, Andrew, Domingo, Enric, Robineau, James, Brown, Louise, Fisher, David, Seymour, Matthew T., Quirke, Phil, Bankhead, Peter, McQuaid, Stephen, Lawler, Mark, McArt, Darragh G., Maughan, Tim S., James, Jacqueline A., Salto-Tellez, Manuel

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CACNA1D overexpression and voltage-gated calcium channels in prostate cancer during androgen deprivation von McKerr, Niamh, Mohd-Sarip, Adone, Dorrian, Hannah, Breen, Conor, A. James, Jacqueline, McQuaid, Stephen, Mills, Ian G., McCloskey, Karen D.

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Tissue-based next generation sequencing: application in a universal healthcare system von Hynes, Seán O, Pang, Brendan, James, Jacqueline A, Maxwell, Perry, Salto-Tellez, Manuel

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Recommendations for determining HPV status in patients with oropharyngeal cancers under TNM8 guidelines: a two-tier approach von Craig, Stephanie G., Anderson, Lesley A., Schache, Andrew G., Moran, Michael, Graham, Laura, Currie, Keith, Rooney, Keith, Robinson, Max, Upile, Navdeep S., Brooker, Rachel, Mesri, Mina, Bingham, Victoria, McQuaid, Stephen, Jones, Terry, McCance, Dennis J., Salto-Tellez, Manuel, McDade, Simon S., James, Jacqueline A.

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A biobank perspective on use of tissue samples donated by trial participants von Speirs, Valerie, Cox, Angela, Chelala, Claude, James, Jacqueline A, Adams, Richard A, Jones, J Louise

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Digital pathology and image analysis in tissue biomarker research von Hamilton, Peter W., Bankhead, Peter, Wang, Yinhai, Hutchinson, Ryan, Kieran, Declan, McArt, Darragh G., James, Jacqueline, Salto-Tellez, Manuel

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HPV-Related Oropharynx Cancer in the United Kingdom: An Evolution in the Understanding of Disease Etiology von Schache, Andrew G, Powell, Ned G, Cuschieri, Kate S, Robinson, Max, Leary, Sam, Mehanna, Hisham, Rapozo, Davy, Long, Anna, Cubie, Heather, Junor, Elizabeth, Monaghan, Hannah, Harrington, Kevin J, Nutting, Christopher M, Schick, Ulrike, Lau, Andy S, Upile, Navdeep, Sheard, Jon, Brougham, Kath, West, Catharine M L, Oguejiofor, Ken, Thomas, Steve, Ness, Andy R, Pring, Miranda, Thomas, Gareth J, King, Emma V, McCance, Dennis J, James, Jacqueline A, Moran, Michael, Sloan, Phil, Shaw, Richard J, Evans, Mererid, Jones, Terry M

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Molecular profiling of signet ring cell colorectal cancer provides a strong rationale for genomic targeted and immune checkpoint inhibitor therapies von Alvi, Muhammad A, Loughrey, Maurice B, Dunne, Philip, McQuaid, Stephen, Turkington, Richard, Fuchs, Marc-Aurel, McGready, Claire, Bingham, Victoria, Pang, Brendan, Moore, Wendy, Maxwell, Perry, Lawler, Mark, James, Jacqueline A, Murray, Graeme I, Wilson, Richard H, Salto-Tellez, Manuel

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The prevalence of viral agents in esophageal adenocarcinoma and Barrett’s esophagus: a systematic review von Kunzmann, Andrew T, Graham, Suzanne, McShane, Charlene M, Doyle, James, Tommasino, Massimo, Johnston, Brian, Jamison, Jackie, James, Jacqueline A, McManus, Damian, Anderson, Lesley A

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