Machine learning and complex biological data von Xu, Chunming, Jackson, Scott A

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Epigenomics: dissecting hybridization and polyploidization von Jackson, Scott A

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Single Nucleotide Polymorphism Identification in Polyploids： A Review, Example, and Recommendations von Clevenger, Josh, Chavarro, Carolina, Pearl, Stephanie A., Ozias-Akins, Peggy, Jackson, Scott A.

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Widespread natural variation of DNA methylation within angiosperms von Niederhuth, Chad E, Bewick, Adam J, Ji, Lexiang, Alabady, Magdy S, Kim, Kyung Do, Li, Qing, Rohr, Nicholas A, Rambani, Aditi, Burke, John M, Udall, Joshua A, Egesi, Chiedozie, Schmutz, Jeremy, Grimwood, Jane, Jackson, Scott A, Springer, Nathan M, Schmitz, Robert J

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Improving End-User Trust in the Quality of Commercial Probiotic Products von Jackson, Scott A, Schoeni, Jean L, Vegge, Christina, Pane, Marco, Stahl, Buffy, Bradley, Michael, Goldman, Virginia S, Burguière, Pierre, Atwater, John B, Sanders, Mary Ellen

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Performing Skin Microbiome Research: A Method to the Madness von Kong, Heidi H., Andersson, Björn, Clavel, Thomas, Common, John E., Jackson, Scott A., Olson, Nathan D., Segre, Julia A., Traidl-Hoffmann, Claudia

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fate of duplicated genes in a polyploid plant genome von Roulin, Anne, Auer, Paul L, Libault, Marc, Schlueter, Jessica, Farmer, Andrew, May, Greg, Stacey, Gary, Doerge, Rebecca W, Jackson, Scott A

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Gene Networks in Plant Biology: Approaches in Reconstruction and Analysis von Li, Yupeng, Pearl, Stephanie A., Jackson, Scott A.

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Widespread and frequent horizontal transfers of transposable elements in plants von El Baidouri, Moaine, Carpentier, Marie-Christine, Cooke, Richard, Gao, Dongying, Lasserre, Eric, Llauro, Christel, Mirouze, Marie, Picault, Nathalie, Jackson, Scott A, Panaud, Olivier

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Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01 von Song, Qijian, Jenkins, Jerry, Jia, Gaofeng, Hyten, David L, Pantalone, Vince, Jackson, Scott A, Schmutz, Jeremy, Cregan, Perry B

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MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs von Zhai, Jixian, Jeong, Dong-Hoon, De Paoli, Emanuele, Park, Sunhee, Rosen, Benjamin D, Li, Yupeng, González, Alvaro J, Yan, Zhe, Kitto, Sherry L, Grusak, Michael A, Jackson, Scott A, Stacey, Gary, Cook, Douglas R, Green, Pamela J, Sherrier, D Janine, Meyers, Blake C

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Genome-Wide Reinforcement of DNA Methylation Occurs during Somatic Embryogenesis in Soybean von Ji, Lexiang, Mathioni, Sandra M., Johnson, Sarah, Tucker, Donna, Bewick, Adam J., Kim, Kyung Do, Daron, Josquin, Slotkin, R. Keith, Jackson, Scott A., Parrott, Wayne A., Meyers, Blake C., Schmitz, Robert J.

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Pod and Seed Trait QTL Identification To Assist Breeding for Peanut Market Preferences von Chavarro, Carolina, Chu, Ye, Holbrook, Corley, Isleib, Thomas, Bertioli, David, Hovav, Ran, Butts, Christopher, Lamb, Marshall, Sorensen, Ronald, A. Jackson, Scott, Ozias-Akins, Peggy

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Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes von Gao, Dongying, Li, Yupeng, Kim, Kyung Do, Abernathy, Brian, Jackson, Scott A

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Comprehensive definition of genome features in Spirodela polyrhiza by high‐depth physical mapping and short‐read DNA sequencing strategies von Michael, Todd P., Bryant, Douglas, Gutierrez, Ryan, Borisjuk, Nikolai, Chu, Philomena, Zhang, Hanzhong, Xia, Jing, Zhou, Junfei, Peng, Hai, El Baidouri, Moaine, Hallers, Boudewijn, Hastie, Alex R., Liang, Tiffany, Acosta, Kenneth, Gilbert, Sarah, McEntee, Connor, Jackson, Scott A., Mockler, Todd C., Zhang, Weixiong, Lam, Eric

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Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs von Hossain, Md Shakhawat, Kawakatsu, Taiji, Kim, Kyung Do, Zhang, Ning, Nguyen, Cuong T., Khan, Saad M., Batek, Josef M., Joshi, Trupti, Schmutz, Jeremy, Grimwood, Jane, Schmitz, Robert J., Xu, Dong, Jackson, Scott A., Ecker, Joseph R., Stacey, Gary

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Sequencing crop genomes: approaches and applications von Jackson, Scott A., Iwata, Aiko, Lee, Suk-Ha, Schmutz, Jeremy, Shoemaker, Randy

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Selection and adaptive introgression guided the complex evolutionary history of the European common bean von Bellucci, Elisa, Benazzo, Andrea, Xu, Chunming, Bitocchi, Elena, Rodriguez, Monica, Alseekh, Saleh, Di Vittori, Valerio, Gioia, Tania, Neumann, Kerstin, Cortinovis, Gaia, Frascarelli, Giulia, Murube, Ester, Trucchi, Emiliano, Nanni, Laura, Ariani, Andrea, Logozzo, Giuseppina, Shin, Jin Hee, Liu, Chaochih, Jiang, Liang, Ferreira, Juan José, Campa, Ana, Attene, Giovanna, Morrell, Peter L., Bertorelle, Giorgio, Graner, Andreas, Gepts, Paul, Fernie, Alisdair R., Jackson, Scott A., Papa, Roberto

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Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut von Clevenger, Josh, Chu, Ye, Chavarro, Carolina, Agarwal, Gaurav, Bertioli, David J, Leal-Bertioli, Soraya C M, Pandey, Manish K, Vaughn, Justin, Abernathy, Brian, Barkley, Noelle A, Hovav, Ran, Burow, Mark, Nayak, Spurthi N, Chitikineni, Annapurna, Isleib, Thomas G, Holbrook, C Corley, Jackson, Scott A, Varshney, Rajeev K, Ozias-Akins, Peggy

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Genomewide association studies for 50 agronomic traits in peanut using the 'reference set' comprising 300 genotypes from 48 countries of the semi-arid tropics of the world von Pandey, Manish K, Upadhyaya, Hari D, Rathore, Abhishek, Vadez, Vincent, Sheshshayee, M S, Sriswathi, Manda, Govil, Mansee, Kumar, Ashish, Gowda, M V C, Sharma, Shivali, Hamidou, Falalou, Kumar, V Anil, Khera, Pawan, Bhat, Ramesh S, Khan, Aamir W, Singh, Sube, Li, Hongjie, Monyo, Emmanuel, Nadaf, H L, Mukri, Ganapati, Jackson, Scott A, Guo, Baozhu, Liang, Xuanqiang, Varshney, Rajeev K

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