VHL substrate transcription factor ZHX2 as an oncogenic driver in clear cell renal cell carcinoma von Zhang, Jing, Wu, Tao, Simon, Jeremy, Takada, Mamoru, Saito, Ryoichi, Fan, Cheng, Liu, Xian-De, Jonasch, Eric, Xie, Ling, Chen, Xian, Yao, Xiaosai, Teh, Bin Tean, Tan, Patrick, Zheng, Xingnan, Li, Mingjie, Lawrence, Cortney, Fan, Jie, Geng, Jiang, Liu, Xijuan, Hu, Lianxin, Wang, Jun, Liao, Chengheng, Hong, Kai, Zurlo, Giada, Parker, Joel S, Auman, J Todd, Perou, Charles M, Rathmell, W Kimryn, Kim, William Y, Kirschner, Marc W, Kaelin, Jr, William G, Baldwin, Albert S, Zhang, Qing

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Adopting duplex sequencing technology for genetic toxicity testing: A proof-of-concept mutagenesis experiment with N-ethyl-N-nitrosourea (ENU)-exposed rats von Smith-Roe, Stephanie L., Hobbs, Cheryl A., Hull, Victoria, Todd Auman, J., Recio, Leslie, Streicker, Michael A., Rivas, Miriam V., Pratt, Gabriel A., Lo, Fang Yin, Higgins, Jacob E., Schmidt, Elizabeth K., Williams, Lindsey N., Nachmanson, Daniela, Valentine III, Charles C., Salk, Jesse J., Witt, Kristine L.

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Genetic variation determines VEGF-A plasma levels in cancer patients von Innocenti, Federico, Jiang, Chen, Sibley, Alexander B., Etheridge, Amy S., Hatch, Ace J., Denning, Stefanie, Niedzwiecki, Donna, Shterev, Ivo D., Lin, Jiaxing, Furukawa, Yoichi, Kubo, Michiaki, Kindler, Hedy L., Auman, J. Todd, Venook, Alan P., Hurwitz, Herbert I., McLeod, Howard L., Ratain, Mark J., Gordan, Raluca, Nixon, Andrew B., Owzar, Kouros

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Identification of Genes Implicated in Methapyrilene-Induced Hepatotoxicity by Comparing Differential Gene Expression in Target and Nontarget Tissue von J. Todd Auman, Jeff Chou, Kevin Gerrish, Huang, Qihong, Jayadev, Supriya, Blanchard, Kerry, Paules, Richard S.

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Differential gene expression profiling in whole blood during acute systemic inflammation in lipopolysaccharide-treated rats von Fannin, Rick D, Auman, J. Todd, Bruno, Maribel E, Sieber, Stella O, Ward, Sandra M, Tucker, Charles J, Merrick, B. Alex, Paules, Richard S

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A genome-wide association analysis of temozolomide response using lymphoblastoid cell lines shows a clinically relevant association with MGMT von Brown, Chad C, Havener, Tammy M, Medina, Marisa W, Auman, J Todd, Mangravite, Lara M, Krauss, Ronald M, McLeod, Howard L, Motsinger-Reif, Alison A

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Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype von Lobenhofer, Edward K, Auman, J Todd, Blackshear, Pamela E, Boorman, Gary A, Bushel, Pierre R, Cunningham, Michael L, Fostel, Jennifer M, Gerrish, Kevin, Heinloth, Alexandra N, Irwin, Richard D, Malarkey, David E, Merrick, B Alex, Sieber, Stella O, Tucker, Charles J, Ward, Sandra M, Wilson, Ralph E, Hurban, Patrick, Tennant, Raymond W, Paules, Richard S

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Cancer Pharmacogenomics: DNA Genotyping and Gene Expression Profiling to Identify Molecular Determinants of Chemosensitivity von Auman, J. Todd, McLeod, Howard L.

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Heat map visualization of high-density clinical chemistry data von Auman, J. Todd, Boorman, Gary A, Wilson, Ralph E, Travlos, Gregory S, Paules, Richard S

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Abstract SY12-03: Multi-tumor analysis of TCGA data identifies expression commonalities across tumor types von Hoadley, Katherine A., Fan, Cheng, Wilkerson, Matthew D., Mose, Lisle E., Jefferys, Stuart R., Auman, J. Todd, Parker, Joel S., Hayes, D. Neil, Perou, Charles M.

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A genome-wide association analysis of temozolomide response using lymphoblastoid cell lines reveals a clinically relevant association with MGMT von Brown, Chad C., Havener, Tammy M., Medina, Marisa Wong, Auman, J. Todd, Mangravite, Lara M., Krauss, Ronald M., McLeod, Howard L., Motsinger-Reif, Alison A.

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Chronic nicotine-induced improvement of spatial working memory and D2 dopamine effects in rats von Levin, Edward D., Christopher, N. Channelle, Briggs, Sandra J., Auman, J. Todd

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CANCER PHARMACOGENOMICS : DNA GENOTYPING AND GENE EXPRESSION PROFILING TO IDENTIFY MOLECULAR DETERMINANTS OF CHEMOSENSITIVITY: Pharmacogenetics in Drug Metabolism and Disposition von AUMAN, J. Todd, MCLEOD, Howard L

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Working memory performance and cholinergic effects in the ventral tegmental area and substantia nigra von Levin, Edward D., Briggs, Sandra J., Christopher, N.Channelle, Auman, J.Todd

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Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles von Farshidfar, Farshad, Zheng, Siyuan, Gingras, Marie-Claude, Newton, Yulia, Shih, Juliann, Robertson, A. Gordon, Hinoue, Toshinori, Hoadley, Katherine A, Gibb, Ewan A, Roszik, Jason, Covington, Kyle R, Wu, Chia-Chin, Shinbrot, Eve, Stransky, Nicolas, Hegde, Apurva, Yang, Ju Dong, Reznik, Ed, Sadeghi, Sara, Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I, Hess, Julian M, Auman, J. Todd, Rhie, Suhn K, Bowlby, Reanne, Borad, Mitesh J, Zhu, Andrew X, Stuart, Josh M, Sander, Chris, Akbani, Rehan, Cherniack, Andrew D, Deshpande, Vikram, Mounajjed, Taofic, Foo, Wai Chin, Torbenson, Michael S, Kleiner, David E, Laird, Peter W, Wheeler, David A, McRee, Autumn J, Bathe, Oliver F, Andersen, Jesper B, Bardeesy, Nabeel, Roberts, Lewis R, Kwong, Lawrence N

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Gene expression patterns correlated to methapyrilene-mediated hepatotoxicity von J. Todd Auman, Chou, Jeff, Gerrish, Kevin, Qihong Huang, Supriya Jayadev, Blanchard, Kerry, Paules, Richard S.

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Hierarchical clustering of tissue samples after methapyrilene administration von J. Todd Auman, Chou, Jeff, Gerrish, Kevin, Qihong Huang, Supriya Jayadev, Blanchard, Kerry, Paules, Richard S.

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Hierarchical clustering of genes involved in ER stress and the unfolded protein response von J. Todd Auman, Chou, Jeff, Gerrish, Kevin, Qihong Huang, Supriya Jayadev, Blanchard, Kerry, Paules, Richard S.

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Integrated genomic characterization of endometrial carcinoma von Getz, G, Gabriel, S, Cibulskis, K, Lander, E, Sivachenko, A, Sougnez, C, Lawrence, M, Kandoth, C, Dooling, D, Fulton, R, Fulton, L, Kalicki-Veizer, J, McLellan, M, O'Laughlin, M, Schmidt, H, Wilson, R, Ye, K, Li, D, Ally, A, Balasundaram, M, Birol, I, Butterfield, Y, Carlsen, R, Carter, C, Chu, A, Chuah, E, Chun, H, Dhalla, N, Guin, R, Hirst, C, Holt, R, Jones, S, Lee, D, Li, H, Marra, M, Mayo, M, Moore, R, Mungall, A, Plettner, P, Schein, J, Sipahimalani, P, Tam, A, Varhol, Richard, Gordon Robertson, A, Cherniack, A, Pashtan, I, Saksena, G, Onofrio, R, Schumacher, S, Tabak, B, Carter, S, Hernandez, B, Gentry, J, Salvesen, H, Ardlie, K, Winckler, W, Beroukhim, R, Meyerson, M, Hadjipanayis, A, Lee, S, Mahadeshwar, H, Park, P, Protopopov, A, Ren, X, Seth, S, Song, X, Tang, J, Xi, R, Yang, L, Dong, Z, Kucherlapati, R, Chin, L, Zhang, J, Todd Auman, J, Balu, S, Bodenheimer, T, Buda, E, Neil Hayes, D, Hoyle, A, Jefferys, S, Jones, C, Meng, S, Mieczkowski, P, Mose, L, Parker, J, Perou, C

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PCA of transcripts identified as differentially expressed across the 'Response to hepatocellular injury' category in blood von Lobenhofer, Edward K, J Todd Auman, Blackshear, Pamela E, Boorman, Gary A, Bushel, Pierre R, Cunningham, Michael L, Fostel, Jennifer M, Gerrish, Kevin, Heinloth, Alexandra N, Irwin, Richard D, Malarkey, David E, B Alex Merrick, Sieber, Stella O, Tucker, Charles J, Ward, Sandra M, Wilson, Ralph E, Hurban, Patrick, Tennant, Raymond W, Paules, Richard S

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