Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types von Klauda, Jeffery B, Venable, Richard M, Freites, J. Alfredo, O’Connor, Joseph W, Tobias, Douglas J, Mondragon-Ramirez, Carlos, Vorobyov, Igor, MacKerell, Alexander D, Pastor, Richard W

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Native American ataxia medicines rescue ataxia-linked mutant potassium channel activity via binding to the voltage sensing domain von Manville, Rían W., Alfredo Freites, J., Sidlow, Richard, Tobias, Douglas J., Abbott, Geoffrey W.

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Experimental and Simulation Studies of Aquaporin 0 Water Permeability and Regulation von Hall, James E, Freites, J. Alfredo, Tobias, Douglas J

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Molecular Biophysics of Orai Store-Operated Ca2+ Channels von Amcheslavsky, Anna, Wood, Mona L., Yeromin, Andriy V., Parker, Ian, Freites, J. Alfredo, Tobias, Douglas J., Cahalan, Michael D.

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YidC Insertase of Escherichia coli: Water Accessibility and Membrane Shaping von Chen, Yuanyuan, Capponi, Sara, Zhu, Lu, Gellenbeck, Patrick, Freites, J. Alfredo, White, Stephen H., Dalbey, Ross E.

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Thermodynamics and Mechanism of the Membrane Permeation of Hv1 Channel Blockers von Lim, Victoria T., Freites, J. Alfredo, Tombola, Francesco, Tobias, Douglas J.

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Structure and hydration of membranes embedded with voltage-sensing domains von Gawrisch, Klaus, Freites, J. Alfredo, Worcester, David L, White, Stephen H, Swartz, Kenton J, Schow, Eric V, Krepkiy, Dmitriy, Mihailescu, Mihaela, Tobias, Douglas J

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Allosteric mechanism of water-channel gating by Ca2+–calmodulin von Reichow, Steve L, Clemens, Daniel M, Freites, J Alfredo, Németh-Cahalan, Karin L, Heyden, Matthias, Tobias, Douglas J, Hall, James E, Gonen, Tamir

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Specific cation effects at aqueous solution–vapor interfaces: Surfactant-like behavior of Li⁺ revealed by experiments and simulations von Perrine, Kathryn A., Parry, Krista M., Stern, Abraham C., Van Spyk, Marijke H. C., Makowski, Michael J., Freites, J. Alfredo, Winter, Bernd, Tobias, Douglas J., Hemminger, John C.

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Arginine in Membranes: The Connection Between Molecular Dynamics Simulations and Translocon-Mediated Insertion Experiments von Schow, Eric V, Freites, J. Alfredo, Cheng, Philip, Bernsel, Andreas, von Heijne, Gunnar, White, Stephen H, Tobias, Douglas J

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Proton-Coupled Dynamics in Lactose Permease von Andersson, Magnus, Bondar, Ana-Nicoleta, Freites, J. Alfredo, Tobias, Douglas J., Kaback, H. Ronald, White, Stephen H.

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Interface Connections of a Transmembrane Voltage Sensor von J. Alfredo Freites, Douglas J. Tobias, von Heijne, Gunnar, White, Stephen H.

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Insights on small molecule binding to the Hv1 proton channel from free energy calculations with molecular dynamics simulations von Lim, Victoria T., Geragotelis, Andrew D., Lim, Nathan M., Freites, J. Alfredo, Tombola, Francesco, Mobley, David L., Tobias, Douglas J.

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Acyl-Chain Methyl Distributions of Liquid-Ordered and -Disordered Membranes von Mihailescu, Mihaela, Vaswani, Rishi G., Jardón-Valadez, Eduardo, Castro-Román, Francisco, Freites, J. Alfredo, Worcester, David L., Chamberlin, A. Richard, Tobias, Douglas J., White, Stephen H.

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Increased hydrophobic surface exposure in the cataract-related G18V variant of human γS-crystallin von Khago, Domarin, Wong, Eric K., Kingsley, Carolyn N., Alfredo Freites, J., Tobias, Douglas J., Martin, Rachel W.

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Opening and closing of the periplasmic gate in lactose permease von Zhou, Yonggang, Guan, Lan, Freites, J. Alfredo, Kaback, H. Ronald

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Water wires in atomistic models of the Hv1 proton channel von Wood, Mona L., Schow, Eric V., Freites, J. Alfredo, White, Stephen H., Tombola, Francesco, Tobias, Douglas J.

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Microscopic Origin of Gating Current Fluctuations in a Potassium Channel Voltage Sensor von Freites, J. Alfredo, Schow, Eric V., White, Stephen H., Tobias, Douglas J.

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Structural Plasticity in the Topology of the Membrane-Interacting Domain of HIV-1 gp41 von Kyrychenko, Alexander, Freites, J. Alfredo, He, Jing, Tobias, Douglas J., Wimley, William C., Ladokhin, Alexey S.

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Molecular Dynamics Simulations of the Eye Lens Water Channel Aquaporin 0 from Fish von Freites, J. Alfredo, Tobias, Douglas J.

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