Identification and characterization of hippuristanol-resistant mutants reveals eIF4A1 dependencies within mRNA 5′ leader regions von Steinberger, Jutta, Shen, Leo, J. Kiniry, Stephen, Naineni, Sai Kiran, Cencic, Regina, Amiri, Mehdi, Aboushawareb, Sarah A E, Chu, Jennifer, Maïga, Rayelle Itoua, Yachnin, Brahm J, Robert, Francis, Sonenberg, Nahum, Baranov, Pavel V, Pelletier, Jerry

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Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals von Fedorova, Alla D., Kiniry, Stephen J., Andreev, Dmitry E., Mudge, Jonathan M., Baranov, Pavel V.

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Addendum: Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals von Fedorova, Alla D., Kiniry, Stephen J., Andreev, Dmitry E., Mudge, Jonathan M., Baranov, Pavel V.

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Impact of eIF2α phosphorylation on the translational landscape of mouse embryonic stem cells von Amiri, Mehdi, Kiniry, Stephen J., Possemato, Anthony P., Mahmood, Niaz, Basiri, Tayebeh, Dufour, Catherine R., Tabatabaei, Negar, Deng, Qiyun, Bellucci, Michael A., Harwalkar, Keerthana, Stokes, Matthew P., Giguère, Vincent, Kaufman, Randal J., Yamanaka, Yojiro, Baranov, Pavel V., Tahmasebi, Soroush, Sonenberg, Nahum

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TASEP modelling provides a parsimonious explanation for the ability of a single uORF to derepress translation during the integrated stress response von Andreev, Dmitry E, Arnold, Maxim, Kiniry, Stephen J, Loughran, Gary, Michel, Audrey M, Rachinskii, Dmitrii, Baranov, Pavel V

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Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling von Gerresheim, Gesche K, Bathke, Jochen, Michel, Audrey M, Andreev, Dmitri E, Shalamova, Lyudmila A, Rossbach, Oliver, Hu, Pan, Glebe, Dieter, Fricke, Markus, Marz, Manja, Goesmann, Alexander, Kiniry, Stephen J, Baranov, Pavel V, Shatsky, Ivan N, Niepmann, Michael

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Exploring Evidence of Non-coding RNA Translation With Trips-Viz and GWIPS-Viz Browsers von Zaheed, Oza, Kiniry, Stephen J., Baranov, Pavel V., Dean, Kellie

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Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data von Kiniry, Stephen J, Judge, Ciara E, Michel, Audrey M, Baranov, Pavel V

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eIF2α controls memory consolidation via excitatory and somatostatin neurons von Sharma, Vijendra, Sood, Rapita, Khlaifia, Abdessattar, Eslamizade, Mohammad Javad, Hung, Tzu-Yu, Lou, Danning, Asgarihafshejani, Azam, Lalzar, Maya, Kiniry, Stephen J., Stokes, Matthew P., Cohen, Noah, Nelson, Alissa J., Abell, Kathryn, Possemato, Anthony P., Gal-Ben-Ari, Shunit, Truong, Vinh T., Wang, Peng, Yiannakas, Adonis, Saffarzadeh, Fatemeh, Cuello, A. Claudio, Nader, Karim, Kaufman, Randal J., Costa-Mattioli, Mauro, Baranov, Pavel V., Quintana, Albert, Sanz, Elisenda, Khoutorsky, Arkady, Lacaille, Jean-Claude, Rosenblum, Kobi, Sonenberg, Nahum

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Computational methods for ribosome profiling data analysis von Kiniry, Stephen J., Michel, Audrey M., Baranov, Pavel V.

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Trips-Viz: a transcriptome browser for exploring Ribo-Seq data von Kiniry, Stephen J, O’Connor, Patrick B F, Michel, Audrey M, Baranov, Pavel V

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Evaluating ribosomal frameshifting in CCR5 mRNA decoding von Khan, Yousuf A., Loughran, Gary, Steckelberg, Anna-Lena, Brown, Katherine, Kiniry, Stephen J., Stewart, Hazel, Baranov, Pavel V., Kieft, Jeffrey S., Firth, Andrew E., Atkins, John F.

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RiboSeq.Org: an integrated suite of resources for ribosome profiling data analysis and visualization von Tierney, Jack A S, Świrski, Michał I, Tjeldnes, Håkon, Kiran, Anmol M, Carancini, Gionmattia, Kiniry, Stephen J, Michel, Audrey M, Kufel, Joanna, Valen, Eivind, Baranov, Pavel V

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GWIPS-viz: 2018 update von Michel, Audrey M, Kiniry, Stephen J, O'Connor, Patrick B F, Mullan, James P, Baranov, Pavel V

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Selection Shapes Synonymous Stop Codon Use in Mammals von Seoighe, Cathal, Kiniry, Stephen J., Peters, Andrew, Baranov, Pavel V., Yang, Haixuan

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Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF von Loughran, Gary, Zhdanov, Alexander V., Mikhaylova, Maria S., Rozov, Fedor N., Datskevich, Petr N., Kovalchuk, Sergey I., Serebryakova, Marina V., Kiniry, Stephen J., Michel, Audrey M., O’Connor, Patrick B. F., Papkovsky, Dmitri B., Atkins, John F., Baranov, Pavel V., Shatsky, Ivan N., Andreev, Dmitry E.

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Development of a ribosome profiling protocol to study translation in Kluyveromyces marxianus von Fenton, Darren A, Kiniry, Stephen J, Yordanova, Martina M, Baranov, Pavel V, Morrissey, John P

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The GWIPS‐viz Browser von Kiniry, Stephen J., Michel, Audrey M., Baranov, Pavel V.

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AMD1 mRNA employs ribosome stalling as a mechanism for molecular memory formation von Yordanova, Martina M., Loughran, Gary, Zhdanov, Alexander V., Mariotti, Marco, Kiniry, Stephen J., O’Connor, Patrick B. F., Andreev, Dmitry E., Tzani, Ioanna, Saffert, Paul, Michel, Audrey M., Gladyshev, Vadim N., Papkovsky, Dmitry B., Atkins, John F., Baranov, Pavel V.

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Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data von Kiniry, Stephen J, Judge, Ciara E, Michel, Audrey M, Baranov, Pavel V

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