CompuCell, a multi-model framework for simulation of morphogenesis von Izaguirre, J. A., Chaturvedi, R., Huang, C., Cickovski, T., Coffland, J., Thomas, G., Forgacs, G., Alber, M., Hentschel, G., Newman, S. A., Glazier, J. A.

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On multiscale approaches to three-dimensional modelling of morphogenesis von Chaturvedi, R, Huang, C, Kazmierczak, B, Schneider, T, Izaguirre, J.A, Glimm, T, Hentschel, H.G.E, Glazier, J.A, Newman, S.A, Alber, M.S

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Shadow hybrid Monte Carlo: an efficient propagator in phase space of macromolecules von Izaguirre, Jesús A., Hampton, Scott S.

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A Hybrid Discrete-Continuum Model for 3-D Skeletogenesis of the Vertebrate Limb von Chaturvedi, R., Huang, C., Izaguirre, J. A., Newman, S. A., Glazier, J. A., Alber, M.

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A framework for three-dimensional simulation of morphogenesis von Cickovski, T.M., Chengbang Huang, Chaturvedi, R., Glimm, T., Hentschel, H.G.E., Alber, M.S., Glazier, J.A., Newman, S.A., Izaguirre, J.A.

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GIPSE: Streamlining the Management of Simulation on the Grid von Wozniak, J. M., Striegel, A., Salyers, D., Izaguirre, J. A.

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Langevin stabilization of molecular dynamics von Izaguirre, Jesús A., Catarello, Daniel P., Wozniak, Justin M., Skeel, Robert D.

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Belief Propagation Estimation of Protein and Domain Interactions Using the Sum-Product von Morcos, F, Sikora, M, Alber, M S, Kaiser, D, Izaguirre, J A

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Generosity and gluttony in GEMS: grid enabled molecular simulations von Wozniak, J.M., Brenner, P., Thain, D., Striegel, A., Izaguirre, J.A.

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Predicting Protein-Protein Interactions from Protein Domains Using a Set Cover Approach von Chengbang Huang, Morcos, F., Kanaan, S.P., Wuchty, S., Chen, D.Z., Izaguirre, J.A.

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Multi-model Simulations of Chicken Limb Morphogenesis von Chaturvedi, R., Izaguirre, J. A., Huang, C., Cickovski, T., Virtue, P., Thomas, G., Forgacs, G., Alber, M., Hentschel, G., Newman, S. A., Glazier, J. A.

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Longer time steps for molecular dynamics von Izaguirre, Jesús A., Reich, Sebastian, Skeel, Robert D.

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Making the best of a bad situation: Prioritized storage management in GEMS von Wozniak, J.M., Brenner, P., Thain, D., Striegel, A., Izaguirre, J.A.

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OPC-UA and DPWS interoperability for factory floor monitoring using complex event processing von Izaguirre, M. J. A. G., Lobov, A., Lastra, J. L. M.

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Verlet-I/R-RESPA/Impulse is Limited by Nonlinear Instabilities von Ma, Qun, Izaguirre, Jesus A, Skeel, Robert D

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Biomolecular committor probability calculation enabled by processing in network storage von Brenner, P., Wozniak, J.M., Thain, D., Striegel, A., Peng, J.W., Izaguirre, J.A.

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ProtoMol, an object-oriented framework for prototyping novel algorithms for molecular dynamics von Matthey, Thierry, Cickovski, Trevor, Hampton, Scott, Ko, Alice, Ma, Qun, Nyerges, Matthew, Raeder, Troy, Slabach, Thomas, Izaguirre, Jesus A

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Parallel multigrid summation for the N -body problem von Izaguirre, Jesús A., Hampton, Scott S., Matthey, Thierry

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C ompu C ell , a multi-model framework for simulation of morphogenesis von Izaguirre, J. A., Chaturvedi, R., Huang, C., Cickovski, T., Coffland, J., Thomas, G., Forgacs, G., Alber, M., Hentschel, G., Newman, S. A., Glazier, J. A.

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MDSIMAID: Automatic parameter optimization in fast electrostatic algorithms von Crocker, Michael S., Hampton, Scott S., Matthey, Thierry, Izaguirre, Jesús A.

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