HIV-1 Adaptation to Antigen Processing Results in Population-Level Immune Evasion and Affects Subtype Diversification von Tenzer, Stefan, Crawford, Hayley, Pymm, Phillip, Gifford, Robert, Sreenu, Vattipally B., Weimershaus, Mirjana, de Oliveira, Tulio, Burgevin, Anne, Gerstoft, Jan, Akkad, Nadja, Lunn, Daniel, Fugger, Lars, Bell, John, Schild, Hansjörg, van Endert, Peter, Iversen, Astrid K.N.

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Antigen processing influences HIV-specific cytotoxic T lymphocyte immunodominance von Weimershaus, Mirjana, Chang, Chih-hao, Harndahl, Mikkel, Stewart-Jones, Guillaume, Jones, E Yvonne, Schild, Hansjörg, Burgevin, Anne, van Endert, Peter, Wee, Edmund, Buus, Søren, Fugger, Lars, Friis, Lone, McMichael, Andrew J, Klenerman, Paul, Tenzer, Stefan, Gerstoft, Jan, Iversen, Astrid K N, Akkad, Nadja, Lamberth, Kasper

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APOBEC3G-induced hypermutation of human immunodeficiency virus type-1 is typically a discrete "all or nothing" phenomenon von Armitage, Andrew E, Deforche, Koen, Chang, Chih-Hao, Wee, Edmund, Kramer, Beatrice, Welch, John J, Gerstoft, Jan, Fugger, Lars, McMichael, Andrew, Rambaut, Andrew, Iversen, Astrid K N

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Acute Inflammatory Diseases of the Central Nervous System After SARS-CoV-2 Vaccination von Francis, Anna G., Elhadd, Kariem, Camera, Valentina, Ferreira dos Santos, Monica, Rocchi, Chiara, Adib-Samii, Poneh, Athwal, Bal, Attfield, Kathrine, Barritt, Andrew, Craner, Matthew, Fisniku, Leonora, Iversen, Astrid K.N., Leach, Oliver, Matthews, Lucy, Redmond, Ian, O'Riordan, Jonathan, Scalfari, Antonio, Tanasescu, Radu, Wren, Damian, Huda, Saif, Leite, Maria Isabel, Fugger, Lars, Palace, Jacqueline

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HIV-1 p24Gag adaptation to modern and archaic HLA-allele frequency differences in ethnic groups contributes to viral subtype diversification von Kist, Nicolaas C, Lambert, Ben, Campbell, Samuel, Katzourakis, Aris, Lunn, Daniel, Lemey, Philippe, Iversen, Astrid K N

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Sequential broadening of CTL responses in early HIV-1 infection is associated with viral escape von Karlsson, Annika C, Iversen, Astrid K N, Chapman, Joan M, de Oliviera, Tulio, Spotts, Gerald, McMichael, Andrew J, Davenport, Miles P, Hecht, Frederick M, Nixon, Douglas F

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Recovery from COVID-19 in a B-cell-depleted multiple sclerosis patient von Wurm, Hannah, Attfield, Kate, Iversen, Astrid KN, Gold, Ralf, Fugger, Lars, Haghikia, Aiden

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Ancient DNA reveals evolutionary origins of autoimmune diseases von Barrie, William, Irving-Pease, Evan K., Willerslev, Eske, Iversen, Astrid K. N., Fugger, Lars

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Elevated genetic risk for multiple sclerosis emerged in steppe pastoralist populations von Barrie, William, Yang, Yaoling, Irving-Pease, Evan K., Attfield, Kathrine E., Scorrano, Gabriele, Jensen, Lise Torp, Armen, Angelos P., Dimopoulos, Evangelos Antonios, Stern, Aaron, Refoyo-Martinez, Alba, Pearson, Alice, Ramsøe, Abigail, Gaunitz, Charleen, Demeter, Fabrice, Jørkov, Marie Louise S., Møller, Stig Bermann, Springborg, Bente, Klassen, Lutz, Hyldgård, Inger Marie, Wickmann, Niels, Vinner, Lasse, Korneliussen, Thorfinn Sand, Allentoft, Morten E., Sikora, Martin, Kristiansen, Kristian, Rodriguez, Santiago, Nielsen, Rasmus, Iversen, Astrid K. N., Lawson, Daniel J., Fugger, Lars, Willerslev, Eske

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The selection landscape and genetic legacy of ancient Eurasians von Irving-Pease, Evan K., Refoyo-Martínez, Alba, Barrie, William, Ingason, Andrés, Pearson, Alice, Fischer, Anders, Sjögren, Karl-Göran, Halgren, Alma S., Macleod, Ruairidh, Demeter, Fabrice, Henriksen, Rasmus A., Vimala, Tharsika, McColl, Hugh, Vaughn, Andrew H., Speidel, Leo, Stern, Aaron J., Scorrano, Gabriele, Ramsøe, Abigail, Schork, Andrew J., Rosengren, Anders, Zhao, Lei, Kristiansen, Kristian, Iversen, Astrid K. N., Fugger, Lars, Sudmant, Peter H., Lawson, Daniel J., Durbin, Richard, Korneliussen, Thorfinn, Werge, Thomas, Allentoft, Morten E., Sikora, Martin, Nielsen, Rasmus, Racimo, Fernando, Willerslev, Eske

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Repeated plague infections across six generations of Neolithic Farmers von Seersholm, Frederik Valeur, Sjögren, Karl-Göran, Koelman, Julia, Blank, Malou, Svensson, Emma M., Staring, Jacqueline, Fraser, Magdalena, Pinotti, Thomaz, McColl, Hugh, Gaunitz, Charleen, Ruiz-Bedoya, Tatiana, Granehäll, Lena, Villegas-Ramirez, Berenice, Fischer, Anders, Price, T. Douglas, Allentoft, Morten E., Iversen, Astrid K. N., Axelsson, Tony, Ahlström, Torbjörn, Götherström, Anders, Storå, Jan, Kristiansen, Kristian, Willerslev, Eske, Jakobsson, Mattias, Malmström, Helena, Sikora, Martin

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A simple, safe and sensitive method for SARS‐CoV‐2 inactivation and RNA extraction for RT‐qPCR von Kalnina, Lelde, Mateu‐Regué, Àngels, Oerum, Stephanie, Hald, Annemette, Gerstoft, Jan, Oerum, Henrik, Nielsen, Finn Cilius, Iversen, Astrid K. N.

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Epitope length variants balance protective immune responses and viral escape in HIV-1 infection von Pymm, Phillip, Tenzer, Stefan, Wee, Edmund, Weimershaus, Mirjana, Burgevin, Anne, Kollnberger, Simon, Gerstoft, Jan, Josephs, Tracy M., Ladell, Kristin, McLaren, James E., Appay, Victor, Price, David A., Fugger, Lars, Bell, John I., Schild, Hansjörg, van Endert, Peter, Harkiolaki, Maria, Iversen, Astrid K.N.

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Possible footprints of APOBEC3F and/or other APOBEC3 deaminases, but not APOBEC3G, on HIV-1 from patients with acute/early and chronic infections von Armitage, Andrew E, Deforche, Koen, Welch, John J, Van Laethem, Kristel, Camacho, Ricardo, Rambaut, Andrew, Iversen, Astrid K N

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Conserved Footprints of APOBEC3G on Hypermutated Human Immunodeficiency Virus Type 1 and Human Endogenous Retrovirus HERV-K(HML2) Sequences von ARMITAGE, Andrew E, KATZOURAKIS, Aris, DE OLIVEIRA, Tulio, WELCH, John J, BELSHAW, Robert, BISHOP, Kate N, KRAMER, Beatrice, MCMICHAEL, Andrew J, RAMBAUT, Andrew, IVERSEN, Astrid K. N

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AIDS restriction HLA allotypes target distinct intervals of HIV-1 pathogenesis von Carrington, Mary, Gao, Xiaojiang, Bashirova, Arman, Iversen, Astrid K N, Phair, John, Goedert, James J, Buchbinder, Susan, Hoots, Keith, Vlahov, David, Altfeld, Marcus, O'Brien, Stephen J

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Acute cytomegalovirus infection in Kenyan HIV-infected infants von Slyker, Jennifer A, Lohman-Payne, Barbara L, John-Stewart, Grace C, Maleche-Obimbo, Elizabeth, Emery, Sandra, Richardson, Barbra, Dong, Tao, Iversen, Astrid Kn, Mbori-Ngacha, Dorothy, Overbaugh, Julie, Emery, Vincent C, Rowland-Jones, Sarah L

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Rapid antigen processing and presentation of a protective and immunodominant HLA-B27-restricted hepatitis C virus-specific CD8+ T-cell epitope von Schmidt, Julia, Iversen, Astrid K N, Tenzer, Stefan, Gostick, Emma, Price, David A, Lohmann, Volker, Distler, Ute, Bowness, Paul, Schild, Hansjörg, Blum, Hubert E, Klenerman, Paul, Neumann-Haefelin, Christoph, Thimme, Robert

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HIV-1 p24Gag adaptation to modern and archaic HLA-allele frequency differences in ethnic groups contributes to viral subtype diversification von Kist, Nicolaas C, Lambert, Ben, Campbell, Samuel, Katzourakis, Aris, Lunn, Daniel, Lemey, Philippe, Iversen, Astrid K.N

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Possible footprints of APOBEC3F and/or other APOBEC3 deaminases, but not APOBEC3G, on HIV-1 from patients with acute/early and chronic infections von Armitage, Andrew E, Deforche, Koen, Welch, John J, Van Laethem, Kristel, Camacho, Ricardo Jorge, Rambaut, Andrew, Iversen, Astrid K.N

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