ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature von Ivanisenko, Timofey V, Saik, Olga V, Demenkov, Pavel S, Ivanisenko, Nikita V, Savostianov, Alexander N, Ivanisenko, Vladimir A

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The New Version of the ANDDigest Tool with Improved AI-Based Short Names Recognition von Ivanisenko, Timofey V, Demenkov, Pavel S, Kolchanov, Nikolay A, Ivanisenko, Vladimir A

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An Accurate and Efficient Approach to Knowledge Extraction from Scientific Publications Using Structured Ontology Models, Graph Neural Networks, and Large Language Models von Ivanisenko, Timofey V, Demenkov, Pavel S, Ivanisenko, Vladimir A

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A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene networks b... von Ivanisenko, Vladimir A, Demenkov, Pavel S, Ivanisenko, Timofey V, Mishchenko, Elena L, Saik, Olga V

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FunGeneNet: a web tool to estimate enrichment of functional interactions in experimental gene sets von Tiys, Evgeny S, Ivanisenko, Timofey V, Demenkov, Pavel S, Ivanisenko, Vladimir A

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Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection von Antropova, Evgeniya A., Khlebodarova, Tamara M., Demenkov, Pavel S., Volianskaia, Anastasiia R., Venzel, Artur S., Ivanisenko, Nikita V., Gavrilenko, Alexandr D., Ivanisenko, Timofey V., Adamovskaya, Anna V., Revva, Polina M., Kolchanov, Nikolay A., Lavrik, Inna N., Ivanisenko, Vladimir A.

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Prioritization of genes involved in endothelial cell apoptosis by their implication in lymphedema using an analysis of associative gene networks with ANDSystem von Saik, Olga V, Nimaev, Vadim V, Usmonov, Dilovarkhuja B, Demenkov, Pavel S, Ivanisenko, Timofey V, Lavrik, Inna N, Ivanisenko, Vladimir A

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AI-Assisted Identification of Primary and Secondary Metabolomic Markers for Postoperative Delirium von Ivanisenko, Vladimir A, Rogachev, Artem D, Makarova, Aelita-Luiza A, Basov, Nikita V, Gaisler, Evgeniy V, Kuzmicheva, Irina N, Demenkov, Pavel S, Venzel, Artur S, Ivanisenko, Timofey V, Antropova, Evgenia A, Kolchanov, Nikolay A, Plesko, Victoria V, Moroz, Gleb B, Lomivorotov, Vladimir V, Pokrovsky, Andrey G

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Interactome of the hepatitis C virus: Literature mining with ANDSystem von Saik, Olga V., Ivanisenko, Timofey V., Demenkov, Pavel S., Ivanisenko, Vladimir A.

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Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks von Saik, Olga V, Demenkov, Pavel S, Ivanisenko, Timofey V, Bragina, Elena Yu, Freidin, Maxim B, Goncharova, Irina A, Dosenko, Victor E, Zolotareva, Olga I, Hofestaedt, Ralf, Lavrik, Inna N, Rogaev, Evgeny I, Ivanisenko, Vladimir A

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Molecular analysis of the benthos microbial community in Zavarzin thermal spring (Uzon Caldera, Kamchatka, Russia) von Rozanov, Alexey S, Bryanskaya, Alla V, Malup, Tatiana K, Meshcheryakova, Irina A, Lazareva, Elena V, Taran, Oksana P, Ivanisenko, Timofey V, Ivanisenko, Vladimir A, Zhmodik, Sergey M, Kolchanov, Nikolay A, Peltek, Sergey E

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ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology von Ivanisenko, Vladimir A, Saik, Olga V, Ivanisenko, Nikita V, Tiys, Evgeny S, Ivanisenko, Timofey V, Demenkov, Pavel S, Kolchanov, Nikolay A

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Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder von Uvarova, Yulia E., Demenkov, Pavel S., Kuzmicheva, Irina N., Venzel, Artur S., Mischenko, Elena L., Ivanisenko, Timofey V., Efimov, Vadim M., Bannikova, Svetlana V., Vasilieva, Asya R., Ivanisenko, Vladimir A., Peltek, Sergey E.

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Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature von Saik, Olga V., Demenkov, Pavel S., Ivanisenko, Timofey V., Bragina, Elena Yu, Freidin, Maxim B., Dosenko, Victor E., Zolotareva, Olga I., Choynzonov, Evgeniy L., Hofestaedt, Ralf, Ivanisenko, Vladimir A.

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Web-Based Computational Tools for the Prediction and Analysis of Posttranslational Modifications of Proteins von Ivanisenko, Vladimir A., Ivanisenko, Timofey V., Saik, Olga V., Demenkov, Pavel S., Afonnikov, Dmitry A., Kolchanov, Nikolay A.

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Young «oil site» of the Uzon Caldera as a habitat for unique microbial life von Peltek, Sergey E, Bryanskaya, Alla V, Uvarova, Yuliya E, Rozanov, Aleksey S, Ivanisenko, Timofey V, Ivanisenko, Vladimir A, Lazareva, Elena V, Saik, Olga V, Efimov, Vadim M, Zhmodik, Sergey M, Taran, Oxana P, Slynko, Nikolay M, Shekhovtsov, Sergey V, Parmon, Valentin N, Dobretsov, Nikolay L, Kolchanov, Nikolay A

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Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome) von Glotov, Andrey S, Tiys, Evgeny S, Vashukova, Elena S, Pakin, Vladimir S, Demenkov, Pavel S, Saik, Olga V, Ivanisenko, Timofey V, Arzhanova, Olga N, Mozgovaya, Elena V, Zainulina, Marina S, Kolchanov, Nikolay A, Baranov, Vladislav S, Ivanisenko, Vladimir A

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Biodiversity of the microbial mat of the Garga hot spring von Rozanov, Alexey Sergeevich, Bryanskaya, Alla Victorovna, Ivanisenko, Timofey Vladimirovich, Malup, Tatyana Konstantinovna, Peltek, Sergey Evgenievich

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NACE: A web-based tool for prediction of intercompartmental efficiency of human molecular genetic networks von Popik, Olga V., Ivanisenko, Timofey V., Saik, Olga V., Petrovskiy, Evgeny D., Lavrik, Inna N., Ivanisenko, Vladimir A.

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Visualization and analysis of a cardio vascular disease- and MUPP1-related biological network combining text mining and data warehouse approaches von Sommer, Björn, Tiys, Evgeny S, Kormeier, Benjamin, Hippe, Klaus, Janowski, Sebastian J, Ivanisenko, Timofey V, Bragin, Anatoly O, Arrigo, Patrizio, Demenkov, Pavel S, Kochetov, Alexey V, Ivanisenko, Vladimir A, Kolchanov, Nikolay A, Hofestädt, Ralf

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