De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing von Schmidt, Maximilian H.-W., Vogel, Alexander, Denton, Alisandra K., Istace, Benjamin, Wormit, Alexandra, van de Geest, Henri, Bolger, Marie E., Alseekh, Saleh, Maß, Janina, Pfaff, Christian, Schurr, Ulrich, Chetelat, Roger, Maumus, Florian, Aury, Jean-Marc, Koren, Sergey, Fernie, Alisdair R., Zamir, Dani, Bolger, Anthony M., Usadel, Björn

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Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing von Belser, Caroline, Baurens, Franc-Christophe, Noel, Benjamin, Martin, Guillaume, Cruaud, Corinne, Istace, Benjamin, Yahiaoui, Nabila, Labadie, Karine, Hřibová, Eva, Doležel, Jaroslav, Lemainque, Arnaud, Wincker, Patrick, D’Hont, Angélique, Aury, Jean-Marc

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Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps von Belser, Caroline, Istace, Benjamin, Denis, Erwan, Dubarry, Marion, Baurens, Franc-Christophe, Falentin, Cyril, Genete, Mathieu, Berrabah, Wahiba, Chèvre, Anne-Marie, Delourme, Régine, Deniot, Gwenaëlle, Denoeud, France, Duffé, Philippe, Engelen, Stefan, Lemainque, Arnaud, Manzanares-Dauleux, Maria, Martin, Guillaume, Morice, Jérôme, Noel, Benjamin, Vekemans, Xavier, D’Hont, Angélique, Rousseau-Gueutin, Mathieu, Barbe, Valérie, Cruaud, Corinne, Wincker, Patrick, Aury, Jean-Marc

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Population genomics of apricots unravels domestication history and adaptive events von Groppi, Alexis, Liu, Shuo, Cornille, Amandine, Decroocq, Stéphane, Bui, Quynh Trang, Tricon, David, Cruaud, Corinne, Arribat, Sandrine, Belser, Caroline, Marande, William, Salse, Jérôme, Huneau, Cécile, Rodde, Nathalie, Rhalloussi, Wassim, Cauet, Stéphane, Istace, Benjamin, Denis, Erwan, Carrère, Sébastien, Audergon, Jean-Marc, Roch, Guillaume, Lambert, Patrick, Zhebentyayeva, Tetyana, Liu, Wei-Sheng, Bouchez, Olivier, Lopez-Roques, Céline, Serre, Rémy-Félix, Debuchy, Robert, Tran, Joseph, Wincker, Patrick, Chen, Xilong, Pétriacq, Pierre, Barre, Aurélien, Nikolski, Macha, Aury, Jean-Marc, Abbott, Albert Glenn, Giraud, Tatiana, Decroocq, Véronique

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Corrigendum: LocoGSE, a sequence-based genome size estimator for plants von Guenzi-Tiberi, Pierre, Istace, Benjamin, Alsos, Inger Greve, Coissac, Eric, Lavergne, Sébastien, Aury, Jean-Marc, Denoeud, France

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Long-read assembly of the Brassica napus reference genome Darmor-bzh von Rousseau-Gueutin, Mathieu, Belser, Caroline, Da Silva, Corinne, Richard, Gautier, Istace, Benjamin, Cruaud, Corinne, Falentin, Cyril, Boideau, Franz, Boutte, Julien, Delourme, Regine, Deniot, Gwenaëlle, Engelen, Stefan, de Carvalho, Julie Ferreira, Lemainque, Arnaud, Maillet, Loeiz, Morice, Jérôme, Wincker, Patrick, Denoeud, France, Chèvre, Anne-Marie, Aury, Jean-Marc

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Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection von Canaguier, Aurélie, Guilbaud, Romane, Denis, Erwan, Magdelenat, Ghislaine, Belser, Caroline, Istace, Benjamin, Cruaud, Corinne, Wincker, Patrick, Le Paslier, Marie-Christine, Faivre-Rampant, Patricia, Barbe, Valérie

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BiSCoT: improving large eukaryotic genome assemblies with optical maps von Istace, Benjamin, Belser, Caroline, Aury, Jean-Marc

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LocoGSE, a sequence-based genome size estimator for plants von Guenzi-Tiberi, Pierre, Istace, Benjamin, Alsos, Inger Greve, Coissac, Eric, Lavergne, Sébastien, Aury, Jean-Marc, Denoeud, France

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Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp von Farhat, Sarah, Le, Phuong, Kayal, Ehsan, Noel, Benjamin, Bigeard, Estelle, Corre, Erwan, Maumus, Florian, Florent, Isabelle, Alberti, Adriana, Aury, Jean-Marc, Barbeyron, Tristan, Cai, Ruibo, Da Silva, Corinne, Istace, Benjamin, Labadie, Karine, Marie, Dominique, Mercier, Jonathan, Rukwavu, Tsinda, Szymczak, Jeremy, Tonon, Thierry, Alves-de-Souza, Catharina, Rouze, Pierre, van de Peer, Yves, Wincker, Patrick, Rombauts, Stephane, Porcel, Betina M., Guillou, Laure

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Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case von Istace, Benjamin, Belser, Caroline, Falentin, Cyril, Labadie, Karine, Boideau, Franz, Deniot, Gwenaelle, Maillet, Loeiz, Cruaud, Corinne, Bertrand, Laurie, Chevre, Anne-Marie, Wincker, Patrick, Rousseau-Gueutin, Mathieu, Aury, Jean-Marc

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Author Correction to: Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp von Farhat, Sarah, Le, Phuong, Kayal, Ehsan, Noel, Benjamin, Bigeard, Estelle, Corre, Erwan, Maumus, Florian, Florent, Isabelle, Alberti, Adriana, Aury, Jean-Marc, Barbeyron, Tristan, Cai, Ruibo, Da Silva, Corinne, Istace, Benjamin, Labadie, Karine, Marie, Dominique, Mercier, Jonathan, Rukwavu, Tsinda, Szymczak, Jeremy, Tonon, Thierry, Alves-de-Souza, Catharina, Rouzé, Pierre, Van de Peer, Yves, Wincker, Patrick, Rombauts, Stephane, Porcel, Betina M, Guillou, Laure

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Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence von Guérin, Nina, Ciccarella, Marta, Flamant, Elisa, Frémont, Paul, Mangenot, Sophie, Istace, Benjamin, Noel, Benjamin, Belser, Caroline, Bertrand, Laurie, Labadie, Karine, Cruaud, Corinne, Romac, Sarah, Bachy, Charles, Gachenot, Martin, Pelletier, Eric, Alberti, Adriana, Jaillon, Olivier, Wincker, Patrick, Aury, Jean-Marc, Carradec, Quentin

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Author Correction: The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics von Mouton, Alice, Marins, Luísa S., Diedericks, Genevieve, Morselli, Marco, Salces-Ortiz, Judit, Natali, Chiara, Svardal, Hannes, De Pooter, Tim, Joris, Geert, Wood, Jonathan M. D., Herron, Katie E., Watts, Phillip C., Davey, Robert P., Fernández, José M., Alegria, Carla, Amorim, Isabel R., Aury, Jean-Marc, Baldrian, Petr, Baltrunaite, Laima, Barta, Endre, BedHom, Bertrand, Binzer-Panchal, Mahesh, Bista, Iliana, Borges, Paulo A. V., Dias, Guilherme Borges, Buena-Atienza, Elena, Chiara, Matteo, Cruz, Fernando, De Biase, Alessio, del Campo, Javier, Derks, Martijn F. L., Duprat, Simone, Flot, Jean-François, Forni, Giobbe, Fosso, Bruno, Fournier-Chambrillon, Christine, Garg, Shilpa, Gissi, Carmela, Giupponi, Luca, Grüning, Björn, Guerin, Thomas, Hahn, Christoph, Harrison, Peter W., Heintz, Julia, Howe, Kerstin, Hughes, Graham M., Istace, Benjamin, Janžekovič, Franc, Jonsson, Zophonias O., Koskimäki, Janne J., Lähteenaro, Meri, Lantz, Henrik, Lavrinienko, Anton, Madsen, Ole, Magdelenat, Ghislaine, Manousaki, Tereza, Mappes, Tapio, Redondo, Gemma I. Martinez, Mendes, Sofia L., Montagna, Matteo, Moreno, Joao, Mosbech, Mai-Britt, Moura, Mónica, Musilova, Zuzana, Myers, Eugene, Nater, Alexander, Nicholson, Pamela, Niell, Manuel, Nijland, Reindert, Noel, Benjamin, Olsen, Remi-Andre, Ometto, Lino, Palinauskas, Vaidas, Palsson, Snaebjorn, Panibe, Jerome P., Pavlek, Martina, Poulakakis, Nikos, Resendes, Roberto, Riesgo, Ana, Soares, Andre E. R., Romeiras, Maria M., Roxo, Guilherme, Rüber, Lukas, Ruiz-Lopez, Maria Jose, Spada, Alberto, Stefanovic, Milomir, Steger, Viktor, Stiller, Josefin, Stöck, Matthias, Trindade, Helena, Vacherie, Benoit, Vargas-Chavez, Carlos, Vella, Noel, Vella, Adriana, Villa, Sara, Wincker, Patrick, Winkler, Sylke, Ciofi, Claudio, Waterhouse, Robert M., Mazzoni, Camila J.

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The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics von Mouton, Alice, Marins, Luísa S., Diedericks, Genevieve, Morselli, Marco, Salces-Ortiz, Judit, Natali, Chiara, Svardal, Hannes, De Pooter, Tim, Joris, Geert, Wood, Jonathan M. D., Herron, Katie E., Watts, Phillip C., Davey, Robert P., Fernández, José M., Alegria, Carla, Amorim, Isabel R., Aury, Jean-Marc, Baldrian, Petr, Baltrunaite, Laima, Barta, Endre, BedHom, Bertrand, Binzer-Panchal, Mahesh, Bista, Iliana, Borges, Paulo A. V., Dias, Guilherme Borges, Buena-Atienza, Elena, Chiara, Matteo, Cruz, Fernando, De Biase, Alessio, del Campo, Javier, Derks, Martijn F. L., Duprat, Simone, Flot, Jean-François, Forni, Giobbe, Fosso, Bruno, Fournier-Chambrillon, Christine, Garg, Shilpa, Gissi, Carmela, Giupponi, Luca, Grüning, Björn, Guerin, Thomas, Hahn, Christoph, Harrison, Peter W., Heintz, Julia, Howe, Kerstin, Hughes, Graham M., Istace, Benjamin, Janžekovič, Franc, Jonsson, Zophonias O., Koskimäki, Janne J., Lähteenaro, Meri, Lantz, Henrik, Lavrinienko, Anton, Madsen, Ole, Magdelenat, Ghislaine, Manousaki, Tereza, Mappes, Tapio, Redondo, Gemma I. Martinez, Mendes, Sofia L., Montagna, Matteo, Moreno, Joao, Mosbech, Mai-Britt, Moura, Mónica, Musilova, Zuzana, Myers, Eugene, Nater, Alexander, Nicholson, Pamela, Niell, Manuel, Nijland, Reindert, Noel, Benjamin, Olsen, Remi-Andre, Ometto, Lino, Palinauskas, Vaidas, Palsson, Snaebjorn, Panibe, Jerome P., Pavlek, Martina, Poulakakis, Nikos, Resendes, Roberto, Riesgo, Ana, Soares, Andre E. R., Romeiras, Maria M., Roxo, Guilherme, Rüber, Lukas, Ruiz-Lopez, Maria Jose, Spada, Alberto, Stefanovic, Milomir, Steger, Viktor, Stiller, Josefin, Stöck, Matthias, Trindade, Helena, Vacherie, Benoit, Vargas-Chavez, Carlos, Vella, Noel, Vella, Adriana, Villa, Sara, Wincker, Patrick, Winkler, Sylke, Ciofi, Claudio, Waterhouse, Robert M., Mazzoni, Camila J.

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Chromosome-scale assembly of the yellow mealworm genome von Eleftheriou, Evangelia, Aury, Jean-Marc, Vacherie, Benoît, Istace, Benjamin, Belser, Caroline, Noel, Benjamin, Moret, Yannick, Rigaud, Thierry, Berro, Fabrice, Gasparian, Sona, Labadie-Bretheau, Karine, Lefebvre, Thomas, Madoui, Mohammed-Amin

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Genome evolution across 1,011 Saccharomyces cerevisiae isolates von Peter, Jackson, De Chiara, Matteo, Friedrich, Anne, Yue, Jia-Xing, Pflieger, David, Bergström, Anders, Sigwalt, Anastasie, Barre, Benjamin, Freel, Kelle, Llored, Agnès, Cruaud, Corinne, Labadie, Karine, Aury, Jean-Marc, Istace, Benjamin, Lebrigand, Kevin, Barbry, Pascal, Engelen, Stefan, Lemainque, Arnaud, Wincker, Patrick, Liti, Gianni, Schacherer, Joseph

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Hapo-G, haplotype-aware polishing of genome assemblies with accurate reads von Aury, Jean-Marc, Istace, Benjamin

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Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data von Lima, Leandro, Marchet, Camille, Caboche, Ségolène, Da Silva, Corinne, Istace, Benjamin, Aury, Jean-Marc, Touzet, Hélène, Chikhi, Rayan

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Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection von Canaguier, Aurélie, Guilbaud, Romane, Denis, Erwan, Magdelenat, Ghislaine, Belser, Caroline, Istace, Benjamin, Cruaud, Corinne, Wincker, Patrick, Le Paslier, Marie-Christine, Barbe, Valérie

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