Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates von Hannum, Gregory, Guinney, Justin, Zhao, Ling, Zhang, Li, Hughes, Guy, Sadda, SriniVas, Klotzle, Brandy, Bibikova, Marina, Fan, Jian-Bing, Gao, Yuan, Deconde, Rob, Chen, Menzies, Rajapakse, Indika, Friend, Stephen, Ideker, Trey, Zhang, Kang

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HAT: Hypergraph analysis toolbox von Pickard, Joshua, Chen, Can, Salman, Rahmy, Stansbury, Cooper, Kim, Sion, Surana, Amit, Bloch, Anthony, Rajapakse, Indika

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Spectral identification of topological domains von Chen, Jie, Hero, 3rd, Alfred O, Rajapakse, Indika

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Functional organization of the human 4D Nucleome von Chen, Haiming, Jie Chen, Lindsey A. Muir, Scott Ronquist, Walter Meixner, Mats Ljungman, Thomas Ried, Stephen Smale, Indika Rajapakse

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A unified approach of detecting phase transition in time-varying complex networks von Znaidi, Mohamed Ridha, Sia, Jayson, Ronquist, Scott, Rajapakse, Indika, Jonckheere, Edmond, Bogdan, Paul

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Dynamics and control of state-dependent networks for probing genomic organization von Rajapakse, Indika, Groudine, Mark, Mesbahi, Mehran

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Deciphering multi-way interactions in the human genome von Dotson, Gabrielle A., Chen, Can, Lindsly, Stephen, Cicalo, Anthony, Dilworth, Sam, Ryan, Charles, Jeyarajan, Sivakumar, Meixner, Walter, Stansbury, Cooper, Pickard, Joshua, Beckloff, Nicholas, Surana, Amit, Wicha, Max, Muir, Lindsey A., Rajapakse, Indika

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Nucleome Analysis Reveals Structure-Function Relationships for Colon Cancer von Seaman, Laura, Chen, Haiming, Brown, Markus, Wangsa, Darawalee, Patterson, Geoff, Camps, Jordi, Omenn, Gilbert S, Ried, Thomas, Rajapakse, Indika

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Algorithm for cellular reprogramming von Ronquist, Scott, Patterson, Geoff, Muir, Lindsey A., Lindsly, Stephen, Chen, Haiming, Brown, Markus, Wicha, Max S., Bloch, Anthony, Brockett, Roger, Rajapakse, Indika

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TCF7L2 silencing results in altered gene expression patterns accompanied by local genomic reorganization von Brown, Markus A., Dotson, Gabrielle A., Ronquist, Scott, Emons, Georg, Rajapakse, Indika, Ried, Thomas

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4DNvestigator: time series genomic data analysis toolbox von Lindsly, Stephen, Chen, Can, Liu, Sijia, Ronquist, Scott, Dilworth, Samuel, Perlman, Michael, Rajapakse, Indika

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Single Chromosome Aneuploidy Induces Genome-Wide Perturbation of Nuclear Organization and Gene Expression von Braun, Rüdiger, Ronquist, Scott, Wangsa, Darawalee, Chen, Haiming, Anthuber, Lena, Gemoll, Timo, Wangsa, Danny, Koparde, Vishal, Hunn, Cynthia, Habermann, Jens K., Heselmeyer-Haddad, Kerstin, Rajapakse, Indika, Ried, Thomas

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A lipid-associated macrophage lineage rewires the spatial landscape of adipose tissue in early obesity von Stansbury, Cooper M, Dotson, Gabrielle A, Pugh, Harrison, Rehemtulla, Alnawaz, Rajapakse, Indika, Muir, Lindsey A

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What can systems theory of networks offer to biology? von Rajapakse, Indika, Groudine, Mark, Mesbahi, Mehran

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emergence of lineage-specific chromosomal topologies from coordinate gene regulation von Rajapakse, Indika, Perlman, Michael D, Scalzo, David, Kooperberg, Charles, Groudine, Mark, Kosak, Steven T

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ASK: Adversarial Soft k-Nearest Neighbor Attack and Defense von Wang, Ren, Chen, Tianqi, Yao, Philip, Liu, Sijia, Rajapakse, Indika, Hero, Alfred

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On emerging nuclear order von Rajapakse, Indika, Groudine, Mark

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Human CD206+ macrophages associate with diabetes and adipose tissue lymphoid clusters von Muir, Lindsey A, Cho, Kae Won, Geletka, Lynn M, Baker, Nicki A, Flesher, Carmen G, Ehlers, Anne P, Kaciroti, Niko, Lindsly, Stephen, Ronquist, Scott, Rajapakse, Indika, O'Rourke, Robert W, Lumeng, Carey N

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Conversation with Dr. Steve Smale and Dr. Lee Hartwell von Rajapakse, Indika

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Emergence of function from coordinated cells in a tissue von Rajapakse, Indika, Smale, Stephen

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