The transcription factors TFE3 and TFEB amplify p53 dependent transcriptional programs in response to DNA damage von Brady, Owen A, Jeong, Eutteum, Martina, José A, Pirooznia, Mehdi, Tunc, Ilker, Puertollano, Rosa

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Cell-Free DNA to Detect Heart Allograft Acute Rejection von Agbor-Enoh, Sean, Shah, Palak, Tunc, Ilker, Hsu, Steven, Russell, Stuart, Feller, Erika, Shah, Keyur, Rodrigo, Maria E., Najjar, Samer S., Kong, Hyesik, Pirooznia, Mehdi, Fideli, Ulgen, Bikineyeva, Alfiya, Marishta, Argit, Bhatti, Kenneth, Yang, Yanqin, Mutebi, Cedric, Yu, Kai, Kyoo Jang, Moon, Marboe, Charles, Berry, Gerald J., Valantine, Hannah A.

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Complement receptor CD46 co-stimulates optimal human CD8+ T cell effector function via fatty acid metabolism von Arbore, Giuseppina, West, Erin E., Rahman, Jubayer, Le Friec, Gaelle, Niyonzima, Nathalie, Pirooznia, Mehdi, Tunc, Ilker, Pavlidis, Polychronis, Powell, Nicholas, Li, Yuesheng, Liu, Poching, Servais, Aude, Couzi, Lionel, Fremeaux-Bacchi, Veronique, Placais, Leo, Ferraro, Alastair, Walsh, Patrick R., Kavanagh, David, Afzali, Behdad, Lavender, Paul, Lachmann, Helen J., Kemper, Claudia

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Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection von Singh, Komudi, Chen, Yun-Ching, Hassanzadeh, Shahin, Han, Kim, Judy, Jennifer T, Seifuddin, Fayaz, Tunc, Ilker, Sack, Michael N, Pirooznia, Mehdi

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lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA von Seifuddin, Fayaz, Singh, Komudi, Suresh, Abhilash, Judy, Jennifer T., Chen, Yun-Ching, Chaitankar, Vijender, Tunc, Ilker, Ruan, Xiangbo, Li, Ping, Chen, Yi, Cao, Haiming, Lee, Richard S., Goes, Fernando S., Zandi, Peter P., Jafri, M. Saleet, Pirooznia, Mehdi

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Identification of Genes Contributing to a Long Circadian Period in Drosophila Melanogaster von Kumar, Shailesh, Tunc, Ilker, Tansey, Terry R., Pirooznia, Mehdi, Harbison, Susan T.

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The PPR domain of mitochondrial RNA polymerase is an exoribonuclease required for mtDNA replication in Drosophila melanogaster von Liu, Yi, Chen, Zhe, Wang, Zong-Heng, Delaney, Katherine M., Tang, Juanjie, Pirooznia, Mehdi, Lee, Duck-Yeon, Tunc, Ilker, Li, Yuesheng, Xu, Hong

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Cell-free DNA maps COVID-19 tissue injury and risk of death and can cause tissue injury von Andargie, Temesgen E, Tsuji, Naoko, Seifuddin, Fayaz, Jang, Moon Kyoo, Yuen, Peter St, Kong, Hyesik, Tunc, Ilker, Singh, Komudi, Charya, Ananth, Wilkins, Kenneth, Nathan, Steven, Cox, Andrea, Pirooznia, Mehdi, Star, Robert A, Agbor-Enoh, Sean

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Targeted RNA-sequencing for the quantification of measurable residual disease in acute myeloid leukemia von Dillon, Laura W, Hayati, Sheida, Roloff, Gregory W, Tunc, Ilker, Pirooznia, Mehdi, Mitrofanova, Antonina, Hourigan, Christopher S

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Neutrophil Subsets, Platelets, and Vascular Disease in Psoriasis von Teague, Heather L., PhD, Varghese, Nevin J., BS, Tsoi, Lam C., PhD, Dey, Amit K., MD, Garshick, Michael S., MD, Silverman, Joanna I., BA, Baumer, Yvonne, PhD, Harrington, Charlotte L., BA, Stempinski, Erin, MS, Elnabawi, Youssef A., BS, Dagur, Pradeep K., PhD, Cui, Kairong, PhD, Tunc, Ilker, PhD, Seifuddin, Fayaz, MSc, Joshi, Aditya A., MD, Stansky, Elena, BS, Purmalek, Monica M., BS, Rodante, Justin A., PA, Keel, Andrew, DNP, Aridi, Tarek Z., BS, Carmona-Rivera, Carmelo, PhD, Sanda, Gregory E., BS, Chen, Marcus Y., MD, Pirooznia, Mehdi, MD, PhD, McCoy, J. Philip, PhD, Gelfand, Joel M., MD, Zhao, Keji, PhD, Gudjonsson, Johann E., MD, PhD, Playford, Martin P., PhD, Kaplan, Mariana J., MD, Berger, Jeffrey S., MD, Mehta, Nehal N., MD

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Properties of global‐ and local‐ancestry adjustments in genetic association tests in admixed populations von Martin, Eden R., Tunc, Ilker, Liu, Zhi, Slifer, Susan H., Beecham, Ashley H., Beecham, Gary W.

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Affected Sib-Pair Analyses Identify Signaling Networks Associated With Social Behavioral Deficits in Autism von Pirooznia, Mehdi, Niranjan, Tejasvi, Chen, Yun-Ching, Tunc, Ilker, Goes, Fernando S, Avramopoulos, Dimitrios, Potash, James B, Huganir, Richard L, Zandi, Peter P, Wang, Tao

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Effects of community structure on epidemic spread in an adaptive network von Tunc, Ilker, Shaw, Leah B

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Cfcloud: A Cloud-Based Workflow for Cell-Free DNA Data Analysis von Tunc, Ilker, Agbor-Enoh, Sean, Valantine, Hannah, Thein, Swee Lay, Pirooznia, Mehdi

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Circulating mitochondrial DNA is a proinflammatory DAMP in sickle cell disease von Tumburu, Laxminath, Ghosh-Choudhary, Shohini, Seifuddin, Fayaz T., Barbu, Emilia A., Yang, Simon, Ahmad, Maliha M., Wilkins, Lauren H.W., Tunc, Ilker, Sivakumar, Ishwarya, Nichols, James S., Dagur, Pradeep K., Yang, Shutong, Almeida, Luis E.F., Quezado, Zenaide M.N., Combs, Christian A., Lindberg, Eric, Bleck, Christopher K.E., Zhu, Jun, Shet, Arun S., Chung, Jay H., Pirooznia, Mehdi, Thein, Swee Lay

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Activation and inhibition of nonsense-mediated mRNA decay control the abundance of alternative polyadenylation products von Kishor, Aparna, Fritz, Sarah E, Haque, Nazmul, Ge, Zhiyun, Tunc, Ilker, Yang, Wenjing, Zhu, Jun, Hogg, J Robert

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Donor-derived cell-free DNA accurately detects acute rejection in lung transplant patients, a multicenter cohort study von Jang, Moon Kyoo, Tunc, Ilker, Berry, Gerald J., Marboe, Charles, Kong, Hyesik, Keller, Michael B., Shah, Pali D., Timofte, Irina, Brown, Anne W., Ponor, Ileana L., Mutebi, Cedric, Philogene, Mary C., Yu, Kai, Iacono, Aldo, Orens, Jonathan B., Nathan, Steven D., Agbor-Enoh, Sean

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Use of donor-derived-cell-free DNA as a marker of early allograft injury in primary graft dysfunction (PGD) to predict the risk of chronic lung allograft dysfunction (CLAD) von Keller, Michael, Bush, Errol, Diamond, Joshua M., Shah, Pali, Matthew, Joby, Brown, Anne W, Sun, Junfeng, Timofte, Irina, Kong, Hyesik, Tunc, Ilker, Luikart, Helen, Iacono, Aldo, Nathan, Steven D., Khush, Kiran K., Orens, Jonathan, Jang, Moon, Agbor-Enoh, Sean

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Late manifestation of alloantibody-associated injury and clinical pulmonary antibody-mediated rejection: Evidence from cell-free DNA analysis von Agbor-Enoh, Sean, Jackson, Annette M., Tunc, Ilker, Berry, Gerald J., Cochrane, Adam, Grimm, David, Davis, Andrew, Shah, Pali, Brown, Anne W., Wang, Yan, Timofte, Irina, Shah, Palak, Gorham, Sasha, Wylie, Jennifer, Goodwin, Natalie, Jang, Moon Kyoo, Marishta, Argit, Bhatti, Kenneth, Fideli, Ulgen, Yang, Yanqin, Luikart, Helen, Cao, Zeling, Pirooznia, Mehdi, Zhu, Jun, Marboe, Charles, Iacono, Aldo, Nathan, Steven D., Orens, Jonathan, Valantine, Hannah A., Khush, Kiran

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Applying rigor and reproducibility standards to assay donor-derived cell-free DNA as a non-invasive method for detection of acute rejection and graft injury after heart transplanta... von Agbor-Enoh, Sean, Tunc, Ilker, De Vlaminck, Iwijn, Fideli, Ulgen, Davis, Andrew, Cuttin, Karen, Bhatti, Kenneth, Marista, Argit, Solomon, Michael A, Jackson, Annette, Graninger, Grace, Harper, Bonnie, Luikart, Helen, Wylie, Jennifer, Wang, Xujing, Berry, Gerald, Marboe, Charles, Khush, Kiran, Zhu, Jun, Valantine, Hannah

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