Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples von Zhang, Chuanyi, El-Kebir, Mohammed, Ochoa, Idoia

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SPRING: a next-generation compressor for FASTQ data von Chandak, Shubham, Tatwawadi, Kedar, Ochoa, Idoia, Hernaez, Mikel, Weissman, Tsachy

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iDoComp: a compression scheme for assembled genomes von Ochoa, Idoia, Hernaez, Mikel, Weissman, Tsachy

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MassComp, a lossless compressor for mass spectrometry data von Yang, Ruochen, Chen, Xi, Ochoa, Idoia

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Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors von Weber, Leah L, Zhang, Chuanyi, Ochoa, Idoia, El-Kebir, Mohammed

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Genomic Data Compression von Hernaez, Mikel, Pavlichin, Dmitri, Weissman, Tsachy, Ochoa, Idoia

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Single-cell transcriptional profile of CD34+ hematopoietic progenitor cells from del(5q) myelodysplastic syndromes and impact of lenalidomide von Serrano, Guillermo, Berastegui, Nerea, Díaz-Mazkiaran, Aintzane, García-Olloqui, Paula, Rodriguez-Res, Carmen, Huerga-Dominguez, Sofia, Ainciburu, Marina, Vilas-Zornoza, Amaia, Martin-Uriz, Patxi San, Aguirre-Ruiz, Paula, Ullate-Agote, Asier, Ariceta, Beñat, Lamo-Espinosa, Jose-Maria, Acha, Pamela, Calvete, Oriol, Jimenez, Tamara, Molero, Antonieta, Montoro, Maria Julia, Díez-Campelo, Maria, Valcarcel, David, Solé, Francisco, Alfonso-Pierola, Ana, Ochoa, Idoia, Prósper, Felipe, Ezponda, Teresa, Hernaez, Mikel

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Application of Graph Models to the Identification of Transcriptomic Oncometabolic Pathways in Human Hepatocellular Carcinoma von Barace, Sergio, Santamaría, Eva, Infante, Stefany, Arcelus, Sara, De La Fuente, Jesus, Goñi, Enrique, Tamayo, Ibon, Ochoa, Idoia, Sogbe, Miguel, Sangro, Bruno, Hernaez, Mikel, Avila, Matias A, Argemi, Josepmaria

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SimiC enables the inference of complex gene regulatory dynamics across cell phenotypes von Peng, Jianhao, Serrano, Guillermo, Traniello, Ian M., Calleja-Cervantes, Maria E., Chembazhi, Ullas V., Bangru, Sushant, Ezponda, Teresa, Rodriguez-Madoz, Juan Roberto, Kalsotra, Auinash, Prosper, Felipe, Ochoa, Idoia, Hernaez, Mikel

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VEF: a variant filtering tool based on ensemble methods von Zhang, Chuanyi, Ochoa, Idoia

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FaStore: a space-saving solution for raw sequencing data von Roguski, Łukasz, Ochoa, Idoia, Hernaez, Mikel, Deorowicz, Sebastian

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GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form von Meng, Qingxi, Ochoa, Idoia, Hernaez, Mikel

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mspack: efficient lossless and lossy mass spectrometry data compression von Hanau, Felix, Röst, Hannes, Ochoa, Idoia

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METHCOMP: a special purpose compression platform for DNA methylation data von Peng, Jianhao, Milenkovic, Olgica, Ochoa, Idoia

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Effect of lossy compression of quality scores on variant calling von Ochoa, Idoia, Hernaez, Mikel, Goldfeder, Rachel, Weissman, Tsachy, Ashley, Euan

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JIND: joint integration and discrimination for automated single-cell annotation von Goyal, Mohit, Serrano, Guillermo, Argemi, Josepmaria, Shomorony, Ilan, Hernaez, Mikel, Ochoa, Idoia

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Denoising of Aligned Genomic Data von Fischer-Hwang, Irena, Ochoa, Idoia, Weissman, Tsachy, Hernaez, Mikel

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Unsupervised ensemble learning for genome sequencing von Pagès-Zamora, Alba, Ochoa, Idoia, Cavero, Gonzalo Ruiz, Villalvilla-Ornat, Pol

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QVZ: lossy compression of quality values von Malysa, Greg, Hernaez, Mikel, Ochoa, Idoia, Rao, Milind, Ganesan, Karthik, Weissman, Tsachy

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GTRAC: fast retrieval from compressed collections of genomic variants von Tatwawadi, Kedar, Hernaez, Mikel, Ochoa, Idoia, Weissman, Tsachy

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