Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams von Kerpedjiev, Peter, Hammer, Stefan, Hofacker, Ivo L

Volltext

AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements von Fallmann, Jörg, Sedlyarov, Vitaly, Tanzer, Andrea, Kovarik, Pavel, Hofacker, Ivo L

Volltext

Predicting RNA secondary structures from sequence and probing data von Lorenz, Ronny, Wolfinger, Michael T., Tanzer, Andrea, Hofacker, Ivo L.

Volltext

Sampling globally and locally correct RNA 3D structures using Ernwin, SPQR and experimental SAXS data von Thiel, Bernhard C, Bussi, Giovanni, Poblete, Simón, Hofacker, Ivo L

Volltext

LocARNA-P: accurate boundary prediction and improved detection of structural RNAs von Will, Sebastian, Joshi, Tejal, Hofacker, Ivo L, Stadler, Peter F, Backofen, Rolf

Volltext

Fractional-Order Nonlinear Systems: Modeling, Analysis and Simulation von Petras, Ivo

Volltext

RNAalifold: improved consensus structure prediction for RNA alignments von Bernhart, Stephan H, Hofacker, Ivo L, Will, Sebastian, Gruber, Andreas R, Stadler, Peter F

Volltext

Modified RNAs and predictions with the ViennaRNA Package von Varenyk, Yuliia, Spicher, Thomas, Hofacker, Ivo L, Lorenz, Ronny

Volltext

Functional RNA Structures in the 3′UTR of Tick-Borne, Insect-Specific and No-Known-Vector Flaviviruses von Ochsenreiter, Roman, Hofacker, Ivo, Wolfinger, Michael

Volltext

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering von Will, Sebastian, Reiche, Kristin, Hofacker, Ivo L, Stadler, Peter F, Backofen, Rolf

Volltext

The RNAsnp web server: predicting SNP effects on local RNA secondary structure von Sabarinathan, Radhakrishnan, Tafer, Hakim, Seemann, Stefan E, Hofacker, Ivo L, Stadler, Peter F, Gorodkin, Jan

Volltext

SHAPE directed RNA folding von Lorenz, Ronny, Luntzer, Dominik, Hofacker, Ivo L, Stadler, Peter F, Wolfinger, Michael T

Volltext

Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs von Deforges, Jules, Reis, Rodrigo S, Jacquet, Philippe, Sheppard, Shaoline, Gadekar, Veerendra P, Hart-Smith, Gene, Tanzer, Andrea, Hofacker, Ivo L, Iseli, Christian, Xenarios, Ioannis, Poirier, Yves

Volltext

Vienna RNA Websuite von Gruber, Andreas R, Lorenz, Ronny, Bernhart, Stephan H, Neuböck, Richard, Hofacker, Ivo L

Volltext

RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction von Washietl, Stefan, Hofacker, Ivo L, Stadler, Peter F, Kellis, Manolis

Volltext

Fast and Reliable Prediction of Noncoding RNAs von Washietl, Stefan, Hofacker, Ivo L., Stadler, Peter F., Frauenfelder, Hans

Volltext

Energy-Directed RNA Structure Prediction von Hofacker, Ivo L.

Volltext

Pseudoknots in RNA folding landscapes von Kucharík, Marcel, Hofacker, Ivo L, Stadler, Peter F, Qin, Jing

Volltext

RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data von Washietl, Stefan, Findeiss, Sven, Müller, Stephan A, Kalkhof, Stefan, von Bergen, Martin, Hofacker, Ivo L, Stadler, Peter F, Goldman, Nick

Volltext

From structure prediction to genomic screens for novel non-coding RNAs von Gorodkin, Jan, Hofacker, Ivo L

Volltext