Promotion and Inhibition of Amyloid-β Peptide Aggregation: Molecular Dynamics Studies von Itoh, Satoru G, Okumura, Hisashi

Volltext

Dissociation process of polyalanine aggregates by free electron laser irradiation von Okumura, Hisashi, Itoh, Satoru G, Zen, Heishun, Nakamura, Kazuhiro

Volltext

Molecular dynamics simulations of amyloid- β (16–22) peptide aggregation at air–water interfaces von Okumura, Hisashi, Itoh, Satoru G.

Volltext

Amyloid Fibril Disruption by Ultrasonic Cavitation: Nonequilibrium Molecular Dynamics Simulations von Okumura, Hisashi, Itoh, Satoru G

Volltext

Key Residue for Aggregation of Amyloid‑β Peptides von Itoh, Satoru G., Yagi-Utsumi, Maho, Kato, Koichi, Okumura, Hisashi

Volltext

Role of Water Molecules and Helix Structure Stabilization in the Laser-Induced Disruption of Amyloid Fibrils Observed by Nonequilibrium Molecular Dynamics Simulations von Okumura, Hisashi, Itoh, Satoru G, Nakamura, Kazuhiro, Kawasaki, Takayasu

Volltext

Dynamic properties of SARS-CoV and SARS-CoV-2 RNA-dependent RNA polymerases studied by molecular dynamics simulations von Itoh, Satoru G., Tanimoto, Shoichi, Okumura, Hisashi

Volltext

“Bucket brigade” using lysine residues in RNA-dependent RNA polymerase of SARS-CoV-2 von Tanimoto, Shoichi, Itoh, Satoru G., Okumura, Hisashi

Volltext

Molecular Dynamics Simulation Studies on the Aggregation of Amyloid-β Peptides and Their Disaggregation by Ultrasonic Wave and Infrared Laser Irradiation von Okumura, Hisashi, Itoh, Satoru G

Volltext

Nonequilibrium Molecular Dynamics Method to Generate Poiseuille-Like Flow between Lipid Bilayers von Otawa, Masaki, Itoh, Satoru G., Okumura, Hisashi

Volltext

Replica permutation with solute tempering for molecular dynamics simulation and its application to the dimerization of amyloid-β fragments von Fukuhara, Daiki, Itoh, Satoru G., Okumura, Hisashi

Volltext

Effects of a Hydrophilic/Hydrophobic Interface on Amyloid‑β Peptides Studied by Molecular Dynamics Simulations and NMR Experiments von Itoh, Satoru G, Yagi-Utsumi, Maho, Kato, Koichi, Okumura, Hisashi

Volltext

Ingenuity in performing replica permutation: How to order the state labels for improving sampling efficiency von Fukuhara, Daiki, Yamauchi, Masataka, Itoh, Satoru G., Okumura, Hisashi

Volltext

Single-Molecule Kinetic Observation of Antibody Interactions with Growing Amyloid β Fibrils von Yagi-Utsumi, Maho, Kanaoka, Yui, Miyajima, Shogo, Itoh, Satoru G., Yanagisawa, Katsuhiko, Okumura, Hisashi, Uchihashi, Takayuki, Kato, Koichi

Volltext

pH replica-exchange method based on discrete protonation states von Itoh, Satoru G., Damjanović, Ana, Brooks, Bernard R.

Volltext

Structural and fluctuational difference between two ends of Aβ amyloid fibril: MD simulations predict only one end has open conformations von Okumura, Hisashi, Itoh, Satoru G.

Volltext

Tardigrade Secretory-Abundant Heat-Soluble Protein Varies Entrance Propensity Depending on the Amino-Acid Sequence von Miyazawa, Kazuhisa, Itoh, Satoru G, Yoshida, Yuki, Arakawa, Kazuharu, Okumura, Hisashi

Volltext

All-Atom Molecular Dynamics Simulation Methods for the Aggregation of Protein and Peptides: Replica Exchange/Permutation and Nonequilibrium Simulations von Itoh, Satoru G., Okumura, Hisashi

Volltext

State-of-the-Art Molecular Dynamics Simulation Studies of RNA-Dependent RNA Polymerase of SARS-CoV-2 von Tanimoto, Shoichi, Itoh, Satoru G., Okumura, Hisashi

Volltext

Replica-Permutation Method with the Suwa–Todo Algorithm beyond the Replica-Exchange Method von Itoh, Satoru G, Okumura, Hisashi

Volltext