Estimating the impact of COVID-19 vaccine inequities: a modeling study von Gozzi, Nicolò, Chinazzi, Matteo, Dean, Natalie E., Longini Jr, Ira M., Halloran, M. Elizabeth, Perra, Nicola, Vespignani, Alessandro

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Evolving epidemiology and transmission dynamics of coronavirus disease 2019 outside Hubei province, China: a descriptive and modelling study von Zhang, Juanjuan, Litvinova, Maria, Wang, Wei, Wang, Yan, Deng, Xiaowei, Chen, Xinghui, Li, Mei, Zheng, Wen, Yi, Lan, Chen, Xinhua, Wu, Qianhui, Liang, Yuxia, Wang, Xiling, Yang, Juan, Sun, Kaiyuan, Longini, Ira M, Halloran, M Elizabeth, Wu, Peng, Cowling, Benjamin J, Merler, Stefano, Viboud, Cecile, Vespignani, Alessandro, Ajelli, Marco, Yu, Hongjie

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Modelling the impact of testing, contact tracing and household quarantine on second waves of COVID-19 von Aleta, Alberto, Martín-Corral, David, Pastore y Piontti, Ana, Ajelli, Marco, Litvinova, Maria, Chinazzi, Matteo, Dean, Natalie E., Halloran, M. Elizabeth, Longini Jr, Ira M., Merler, Stefano, Pentland, Alex, Vespignani, Alessandro, Moro, Esteban, Moreno, Yamir

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The effect of travel restrictions on the spread of the 2019 novel coronavirus (COVID-19) outbreak von Chinazzi, Matteo, Davis, Jessica T, Ajelli, Marco, Gioannini, Corrado, Litvinova, Maria, Merler, Stefano, Pastore Y Piontti, Ana, Mu, Kunpeng, Rossi, Luca, Sun, Kaiyuan, Viboud, Cécile, Xiong, Xinyue, Yu, Hongjie, Halloran, M Elizabeth, Longini, Jr, Ira M, Vespignani, Alessandro

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Inferring high-resolution human mixing patterns for disease modeling von Mistry, Dina, Litvinova, Maria, Pastore y Piontti, Ana, Chinazzi, Matteo, Fumanelli, Laura, Gomes, Marcelo F. C., Haque, Syed A., Liu, Quan-Hui, Mu, Kunpeng, Xiong, Xinyue, Halloran, M. Elizabeth, Longini, Ira M., Merler, Stefano, Ajelli, Marco, Vespignani, Alessandro

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SAMBLASTER: fast duplicate marking and structural variant read extraction von Faust, Gregory G, Hall, Ira M

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Transmissibility and Control of Pandemic Influenza A (H1N1) Virus von Yang, Yang, Sugimoto, Jonathan D, Halloran, M. Elizabeth, Basta, Nicole E, Chao, Dennis L, Matrajt, Laura, Potter, Gail, Kenah, Eben, Longini, Ira M. Jr

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BEDTools: a flexible suite of utilities for comparing genomic features von Quinlan, Aaron R., Hall, Ira M.

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Genomic Analysis in the Age of Human Genome Sequencing von Lappalainen, Tuuli, Scott, Alexandra J., Brandt, Margot, Hall, Ira M.

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Epidemiological benefits of more-effective tuberculosis vaccines, drugs, and diagnostics von Abu-Raddad, Laith J, Sabatelli, Lorenzo, Achterberg, Jerusha T, Sugimoto, Jonathan D, Longini, Ira M. Jr, Dye, Christopher, Halloran, M. Elizabeth

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Modeling targeted layered containment of an influenza pandemic in the United States von Halloran, M. Elizabeth, Ferguson, Neil M, Eubank, Stephen, Longini, Ira M. Jr, Cummings, Derek A.T, Lewis, Bryan, Xu, Shufu, Fraser, Christophe, Vullikanti, Anil, Germann, Timothy C, Wagener, Diane, Beckman, Richard, Kadau, Kai, Barrett, Chris, Macken, Catherine A, Burke, Donald S, Cooley, Philip

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LUMPY: a probabilistic framework for structural variant discovery von Layer, Ryan M, Chiang, Colby, Quinlan, Aaron R, Hall, Ira M

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Household Transmission of SARS-CoV-2: A Systematic Review and Meta-analysis von Madewell, Zachary J, Yang, Yang, Longini, Jr, Ira M, Halloran, M Elizabeth, Dean, Natalie E

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FluTE, a publicly available stochastic influenza epidemic simulation model von Chao, Dennis L, Halloran, M Elizabeth, Obenchain, Valerie J, Longini, Jr, Ira M

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Containing Pandemic Influenza at the Source von Longini, Ira M, Nizam, Azhar, Xu, Shufu, Ungchusak, Kumnuan, Hanshaoworakul, Wanna, Cummings, Derek A. T, Halloran, M. Elizabeth

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Mitigation Strategies for Pandemic Influenza in the United States von Germann, Timothy C., Kadau, Kai, Longini, Ira M., Macken, Catherine A.

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Quantifying the importance and location of SARS-CoV-2 transmission events in large metropolitan areas von Aleta, Alberto, Martín-Corral, David, Bakker, Michiel A., y Pionttif, Ana Pastore, Ajelli, Marco, Litvinova, Maria, Chinazzi, Matteo, Dean, Natalie E., Halloran, M. Elizabeth, Longini, Ira M., Pentland, Alex, Vespignania, Alessandro, Moreno, Yamir, Moro, Esteban

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Pericyte-endothelial crosstalk: implications and opportunities for advanced cellular therapies von Geevarghese, Anita, Herman, Ira M

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Structural variants are a major source of gene expression differences in humans and often affect multiple nearby genes von Scott, Alexandra J, Chiang, Colby, Hall, Ira M

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Pediatric ARDS von Cheifetz, Ira M

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