Genetically-barcoded SIV facilitates enumeration of rebound variants and estimation of reactivation rates in nonhuman primates following interruption of suppressive antiretroviral... von Fennessey, Christine M, Pinkevych, Mykola, Immonen, Taina T, Reynaldi, Arnold, Venturi, Vanessa, Nadella, Priyanka, Reid, Carolyn, Newman, Laura, Lipkey, Leslie, Oswald, Kelli, Bosche, William J, Trivett, Matthew T, Ohlen, Claes, Ott, David E, Estes, Jacob D, Del Prete, Gregory Q, Lifson, Jeffrey D, Davenport, Miles P, Keele, Brandon F

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No evidence for ongoing replication on ART in SIV-infected macaques von Immonen, Taina T., Fennessey, Christine M., Lipkey, Leslie, Newman, Laura, Macairan, Agatha, Bosche, Marjorie, Waltz, Nora, Del Prete, Gregory Q., Lifson, Jeffrey D., Keele, Brandon F.

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Transient viral replication during analytical treatment interruptions in SIV infected macaques can alter the rebound-competent viral reservoir von Immonen, Taina T., Fennessey, Christine M., Lipkey, Leslie, Thorpe, Abigail, Del Prete, Gregory Q., Lifson, Jeffrey D., Davenport, Miles P., Keele, Brandon F.

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Genetically barcoded SIV reveals the emergence of escape mutations in multiple viral lineages during immune escape von Immonen, Taina T., Camus, Celine, Reid, Carolyn, Fennessey, Christine M., Del Prete, Gregory Q., Davenport, Miles P., Lifson, Jeffrey D., Keele, Brandon F.

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Rational design and in vivo selection of SHIVs encoding transmitted/founder subtype C HIV-1 envelopes von O'Brien, Sean P, Swanstrom, Adrienne E, Pegu, Amarendra, Ko, Sung-Youl, Immonen, Taina T, Del Prete, Gregory Q, Fennessey, Christine M, Gorman, Jason, Foulds, Kathryn E, Schmidt, Stephen D, Doria-Rose, Nicole, Williamson, Carolyn, Hatziioannou, Theodora, Bieniasz, Paul D, Li, Hui, Shaw, George M, Mascola, John R, Koup, Richard A, Kwong, Peter D, Lifson, Jeffrey D, Roederer, Mario, Keele, Brandon F

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Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population von Immonen, Taina T, Conway, Jessica M, Romero-Severson, Ethan O, Perelson, Alan S, Leitner, Thomas

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Low-level alternative tRNA priming of reverse transcription of HIV-1 and SIV in vivo von Fennessey, Christine M, Camus, Celine, Immonen, Taina T, Reid, Carolyn, Maldarelli, Frank, Lifson, Jeffrey D, Keele, Brandon F

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Early antiretroviral therapy in SIV-infected rhesus macaques reveals a multiphasic, saturable dynamic accumulation of the rebound competent viral reservoir von Keele, Brandon F, Okoye, Afam A, Fennessey, Christine M, Varco-Merth, Benjamin, Immonen, Taina T, Kose, Emek, Conchas, Andrew, Pinkevych, Mykola, Lipkey, Leslie, Newman, Laura, Macairan, Agatha, Bosche, Marjorie, Bosche, William J, Berkemeier, Brian, Fast, Randy, Hull, Mike, Oswald, Kelli, Shoemaker, Rebecca, Silipino, Lorna, Gorelick, Robert J, Duell, Derick, Marenco, Alejandra, Brantley, William, Smedley, Jeremy, Axthelm, Michael, Davenport, Miles P, Lifson, Jeffrey D, Picker, Louis J

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Barcoded viruses facilitate tracking changes to the composition of the rebound-competent reservoir von Keele, B., Immonen, T., Fennessey, C., Lifson, J.

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OP 2.4 – 00145 No Evidence of Ongoing Viral Replication in SIV-Infected Macaques on Combination Antiretroviral Therapy Initiated in the Chronic Phase of Infection Despite Elevated... von Del Prete, G.Q., Nag, M., Immonen, T., Fennessey, C., Bosch, W., Conchas, A., Swanstrom, A.E., Lifson, J., Keele, B.F., Macairan, A., Oswald, K., Fast, R., Shoemaker, R., Silipino, L., Hull, M., Donohue, D., Malys, T., Muthua, G., Breed, M., Kramer, J.

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Reduced evolutionary rates in HIV-1 reveal extensive latency periods among replicating lineages von Immonen, Taina T, Leitner, Thomas

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Clinical Spectrum and Geographic Distribution of Keratitis Fugax Hereditaria Caused by the Pathogenic Variant c.61G>C in NLRP3 von Immonen, Annamari T., Kawan, Sabita, Vesaluoma, Minna, Heiskanen, J. Miikael, Taipale, Claudia, Koskinen, Mira, Majander, Anna, Kivelä, Tero T., Turunen, Joni A.

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Letter to the editor: Keratitis fugax hereditaria is an eye-specific cryopyrin-associated periodic syndrome von Turunen, Joni A., Immonen, Annamari T., Kivelä, Tero T.

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Principles Governing Establishment versus Collapse of HIV-1 Cellular Spread von Hataye, Jason M., Casazza, Joseph P., Best, Katharine, Liang, C. Jason, Immonen, Taina T., Ambrozak, David R., Darko, Samuel, Henry, Amy R., Laboune, Farida, Maldarelli, Frank, Douek, Daniel C., Hengartner, Nicolas W., Yamamoto, Takuya, Keele, Brandon F., Perelson, Alan S., Koup, Richard A.

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Epithelial recurrent erosion dystrophy (ERED) from the splice site altering COL17A1 variant c.3156C>T in families of Finnish‐Swedish ancestry von Turunen, Joni A., Tuisku, Ilpo S., Repo, Pauliina, Mörtenhumer, Sanna, Kawan, Sabita, Järvinen, Reetta‐Stiina, Korsbäck, Anna, Immonen, Annamari T., Kivelä, Tero T.

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In Vivo Validation of the Viral Barcoding of Simian Immunodeficiency Virus SIVmac239 and the Development of New Barcoded SIV and Subtype B and C Simian-Human Immunodeficiency Virus... von Khanal, Sirish, Fennessey, Christine M, O'Brien, Sean P, Thorpe, Abigail, Reid, Carolyn, Immonen, Taina T, Smith, Rodman, Bess, Jr, Julian W, Swanstrom, Adrienne E, Del Prete, Gregory Q, Davenport, Miles P, Okoye, Afam A, Picker, Louis J, Lifson, Jeffrey D, Keele, Brandon F

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Antibody-mediated depletion of viral reservoirs is limited in SIV-infected macaques treated early with antiretroviral therapy von Swanstrom, Adrienne E., Immonen, Taina T., Oswald, Kelli, Pyle, Cathi, Thomas, James A., Bosche, William J., Silipino, Lorna, Hull, Michael, Newman, Laura, Coalter, Vicky, Wiles, Adam, Wiles, Rodney, Kiser, Jacob, Morcock, David R., Shoemaker, Rebecca, Fast, Randy, Breed, Matthew W., Kramer, Joshua, Donohue, Duncan, Malys, Tyler, Fennessey, Christine M., Trubey, Charles M., Deleage, Claire, Estes, Jacob D., Lifson, Jeffrey D., Keele, Brandon F., Del Prete, Gregory Q.

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In Vivo Corneal Confocal Microscopy and Histopathology of Keratitis Fugax Hereditaria From a Pathogenic Variant in NLRP3 von Turunen, Joni A., Immonen, Annamari T., Järvinen, Reetta-Stiina, Kawan, Sabita, Repo, Pauliina, Korsbäck, Anna, Ala-Fossi, Olli, Jaakkola, Aino M., Majander, Anna, Vesaluoma, Minna, Kivelä, Tero T.

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Defining early SIV replication and dissemination dynamics following vaginal transmission von Deleage, Claire, Immonen, Taina T, Fennessey, Christine M, Reynaldi, Arnold, Reid, Carolyn, Newman, Laura, Lipkey, Leslie, Schlub, Timothy E, Camus, Celine, O'Brien, Sean, Smedley, Jeremy, Conway, Jessica M, Del Prete, Gregory Q, Davenport, Miles P, Lifson, Jeffrey D, Estes, Jacob D, Keele, Brandon F

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Early antiretroviral therapy in SIV-infected rhesus macaques reveals a multiphasic, saturable dynamic accumulation of the rebound competent viral reservoir von Brandon F. Keele, Afam A. Okoye, Christine M. Fennessey, Benjamin Varco-Merth, Taina T. Immonen, Emek Kose, Andrew Conchas, Mykola Pinkevych, Leslie Lipkey, Laura Newman, Agatha Macairan, Marjorie Bosche, William J. Bosche, Brian Berkemeier, Randy Fast, Mike Hull, Kelli Oswald, Rebecca Shoemaker, Lorna Silipino, Robert J. Gorelick, Derick Duell, Alejandra Marenco, William Brantley, Jeremy Smedley, Michael Axthelm, Miles P. Davenport, Jeffrey D. Lifson, Louis J. Picker

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