A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species von Ilut, Daniel C., Coate, Jeremy E., Luciano, Amelia K., Owens, Thomas G., May, Gregory D., Farmer, Andrew, Doyle, Jeff J.

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Transcriptomic and evolutionary analysis of the mechanisms by which P. argentatum, a rubber producing perennial, responds to drought von Nelson, Andrew D L, Ponciano, Grisel, McMahan, Colleen, Ilut, Daniel C, Pugh, N Ace, Elshikha, Diaa Eldin, Hunsaker, Douglas J, Pauli, Duke

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Population genomic analysis reveals differential evolutionary histories and patterns of diversity across subgenomes and subpopulations of Brassica napus L von Gazave, Elodie, Tassone, Erica E, Ilut, Daniel C, Wingerson, Megan, Datema, Erwin, Witsenboer, Hanneke M A, Davis, James B, Grant, David, Dyer, John M, Jenks, Matthew A, Brown, Jack, Gore, Michael A

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Defining Loci in Restriction-Based Reduced Representation Genomic Data from Nonmodel Species : Sources of Bias and Diagnostics for Optimal Clustering von Ilut, Daniel C., Nydam, Marie L., Hare, Matthew P.

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Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain von Diepenbrock, Christine H., Kandianis, Catherine B., Lipka, Alexander E., Magallanes-Lundback, Maria, Vaillancourt, Brieanne, Góngora-Castillo, Elsa, Wallace, Jason G., Cepela, Jason, Mesberg, Alex, Bradbury, Peter J., Ilut, Daniel C., Mateos-Hernandez, Maria, Hamilton, John, Owens, Brenda F., Tiede, Tyler, Buckler, Edward S., Rocheford, Torbert, Buell, C. Robin, Gore, Michael A., DellaPenna, Dean

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Eleven biosynthetic genes explain the majority of natural variation in carotenoid levels in maize grain von Diepenbrock, Christine H., Ilut, Daniel C., Magallanes-Lundback, Maria, Kandianis, Catherine B., Lipka, Alexander E., Bradbury, Peter J., Holland, James B., Hamilton, John P., Wooldridge, Edmund, Vaillancourt, Brieanne, Ngora-Castillo, Elsa G., Wallace, Jason G., Cepela, Jason, Mateos-Hernandez, Maria, Owens, Brenda F., Tiede, Tyler, Buckler, Edward S., Rocheford, Torbert, Buell, C. Robin, Gore, Michael A., DellaPenna, Dean

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Synthetic cap rate indices (1991-Covid era) von Christopoulos, Andreas D., Barratt, Joshua G., Ilut, Daniel C.

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Temporal covariance structure of multi-spectral phenotypes and their predictive ability for end-of-season traits in maize von Anche, Mahlet T., Kaczmar, Nicholas S., Morales, Nicolas, Clohessy, James W., Ilut, Daniel C., Gore, Michael A., Robbins, Kelly R.

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Floral gene resources from basal angiosperms for comparative genomics research von Albert, Victor A, Soltis, Douglas E, Carlson, John E, Farmerie, William G, Wall, P Kerr, Ilut, Daniel C, Solow, Teri M, Mueller, Lukas A, Landherr, Lena L, Hu, Yi, Buzgo, Matyas, Kim, Sangtae, Yoo, Mi-Jeong, Frohlich, Michael W, Perl-Treves, Rafael, Schlarbaum, Scott E, Bliss, Barbara J, Zhang, Xiaohong, Tanksley, Steven D, Oppenheimer, David G, Soltis, Pamela S, Ma, Hong, DePamphilis, Claude W, Leebens-Mack, James H

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A sorghum practical haplotype graph facilitates genome‐wide imputation and cost‐effective genomic prediction von Jensen, Sarah E., Charles, Jean Rigaud, Muleta, Kebede, Bradbury, Peter J., Casstevens, Terry, Deshpande, Santosh P., Gore, Michael A., Gupta, Rajeev, Ilut, Daniel C., Johnson, Lynn, Lozano, Roberto, Miller, Zachary, Ramu, Punna, Rathore, Abhishek, Romay, M. Cinta, Upadhyaya, Hari D., Varshney, Rajeev K., Morris, Geoffrey P., Pressoir, Gael, Buckler, Edward S., Ramstein, Guillaume P.

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Genomic characterization of the Native Seeds/SEARCH common bean (Phaseolus vulgaris L.) collection and its seed coat patterns von Wu, Di, Hought, Joy, Baseggio, Matheus, Hart, John P., Gore, Michael A., Ilut, Daniel C.

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Identification of haplotypes at the Rsv4 genomic region in soybean associated with durable resistance to soybean mosaic virus von Ilut, Daniel C., Lipka, Alexander E., Jeong, Namhee, Bae, Dong Nyuk, Kim, Dong Hyun, Kim, Ji Hong, Redekar, Neelam, Yang, Kiwoung, Park, Won, Kang, Sung-Taeg, Kim, Namshin, Moon, Jung-Kyung, Saghai Maroof, M. A., Gore, Michael A., Jeong, Soon-Chun

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EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6000 genes from a basal eudicot von Carlson, J.E, Leebens-Mack, J.H, Wall, P.K, Zahn, L.M, Mueller, L.A, Landherr, L.L, Hu, Y, Ilut, D.C, Arrington, J.M, Choirean, S

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Genome-wide analysis of the omega-3 fatty acid desaturase gene family in Gossypium von Yurchenko, Olga P, Park, Sunjung, Ilut, Daniel C, Inmon, Jay J, Millhollon, Jon C, Liechty, Zach, Page, Justin T, Jenks, Matthew A, Chapman, Kent D, Udall, Joshua A, Gore, Michael A, Dyer, John M

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Genomic diversity and phylogenetic relationships in the genus Parthenium (Asteraceae) von Ilut, Daniel C., Sanchez, Paul L., Costich, Denise E., Friebe, Bernd, Coffelt, Terry A., Dyer, John M., Jenks, Matthew A., Gore, Michael A.

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Selecting Nuclear Sequences for Fine Detail Molecular Phylogenetic Studies in Plants: A Computational Approach and Sequence Repository von Ilut, Daniel C., Doyle, Jeff J.

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A century of guayule: Comprehensive genetic characterization of the US national guayule (Parthenium argentatum A. Gray) germplasm collection von Ilut, Daniel C., Sanchez, Paul L., Coffelt, Terry A., Dyer, John M., Jenks, Matthew A., Gore, Michael A.

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EST database for Liriodendron tulipifera L. floral buds: the first EST resource for functional and comparative genomics in Liriodendron von Liang, Haiying, Carlson, John E, Leebens-Mack, James H, Wall, P. Kerr, Mueller, Lukas A, Buzgo, Matyas, Landherr, Lena L, Hu, Yi, DiLoreto, D. Scott, Ilut, Daniel C, Field, Dawn, Tanksley, Steven D, Ma, Hong, dePamphilis, Claude W

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Genome-wide analysis of the omega-3 fatty acid desaturase gene family in Gossypium von Yurchenko, Olga P, Park, Sunjung, Ilut, Daniel C, Inmon, Jay J, Millhollon, Jon C, Liechty, Zach, Page, Justin T, Jenks, Matthew A, Chapman, Kent D, Udall, Joshua A, Gore, Michael A, Dyer, John M

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EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot von Carlson, John E, Leebens-Mack, James H, Wall, P Kerr, Zahn, Laura M, Mueller, Lukas A, Landherr, Lena L, Hu, Yi, Ilut, Daniel C, Arrington, Jennifer M, Choirean, Stephanie, Becker, Annette, Field, Dawn, Tanksley, Steven D, Ma, Hong, dePamphilis, Claude W

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