Free energy and kinetic rate calculation via non-equilibrium molecular simulation: application to biomolecules von Iida, Shinji, Tomoshi, Kameda

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Structural Fluctuations of Aromatic Residues in an Apo-Form Reveal Cryptic Binding Sites: Implications for Fragment-Based Drug Design von Iida, Shinji, Nakamura, Hironori K, Mashimo, Tadaaki, Fukunishi, Yoshifumi

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Multimodal Structural Distribution of the p53 C‑Terminal Domain upon Binding to S100B via a Generalized Ensemble Method: From Disorder to Extradisorder von Iida, Shinji, Kawabata, Takeshi, Kasahara, Kota, Nakamura, Haruki, Higo, Junichi

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Enhanced conformational sampling to visualize a free-energy landscape of protein complex formation von Iida, Shinji, Nakamura, Haruki, Higo, Junichi

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Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule von Higo, Junichi, Kasahara, Kota, Bekker, Gert-Jan, Ma, Benson, Sakuraba, Shun, Iida, Shinji, Kamiya, Narutoshi, Fukuda, Ikuo, Kono, Hidetoshi, Fukunishi, Yoshifumi, Nakamura, Haruki

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Asymmetric dynamics of dimeric SARS-CoV-2 and SARS-CoV main proteases in an apo form: Molecular dynamics study on fluctuations of active site, catalytic dyad, and hydration water von Iida, Shinji, Fukunishi, Yoshifumi

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Continuum mechanical parameterisation of cytoplasmic dynein from atomistic simulation von Hanson, Benjamin S., Iida, Shinji, Read, Daniel J., Harlen, Oliver G., Kurisu, Genji, Nakamura, Haruki, Harris, Sarah A.

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Dissociation Rate Calculation via Constant-Force Steered Molecular Dynamics Simulation von Iida, Shinji, Kameda, Tomoshi

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WKB and “cubic-WKB” methods as an adiabatic approximation von Iida, Shinji

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Second moments of work and heat for a single-particle stochastic heat engine in a breathing harmonic potential von Iida, Shinji, Negoro, Koki, Yamada, Kanta

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How Does the Society ValueMathematics Education Research? von IIDA, Shinji

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How Does the Society Value Mathematics Education Research? von IIDA, Shinji

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Vous êtes le roi du monde ! » Les employés de bureau et l’évolution de leur image au Japon von Iida, Shinji

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Variation of free-energy landscape of the p53 C-terminal domain induced by acetylation: Enhanced conformational sampling von Iida, Shinji, Mashimo, Tadaaki, Kurosawa, Takashi, Hojo, Hironobu, Muta, Hiroya, Goto, Yuji, Fukunishi, Yoshifumi, Nakamura, Haruki, Higo, Junichi

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Hazard Maps and Risk Communication for Water-related Disaster Risk Reduction and Resilience von IIDA, Shinji

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WKB and "Cubic-WKB" methods as an adiabatic approximation von Iida, Shinji

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1P049 Free-energy landscape of the C-terminal negative regulatory domain of p53(01C. Protein : Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014)) von Iida, Shinji, Nakamura, Haruki, Higo, Junichi

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1P049 p53C末端の負の制御ドメインに関する自由エネルギー地形(01C. 蛋白質 : 物性,ポスター,第52回日本生物物理学会年会(2014年度))

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Molecular dynamics trajectories of protein folding von Iida, Shinji

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Second moments of work and heat for a single particle stochastic heat engine in a breathing harmonic potential von Iida, Shinji, Negoro, Koki, Yamada, Kanta

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