Sampling and refinement protocols for template-based macrocycle docking: 2018 D3R Grand Challenge 4 von Kotelnikov, Sergei, Alekseenko, Andrey, Liu, Cong, Ignatov, Mikhail, Padhorny, Dzmitry, Brini, Emiliano, Lukin, Mark, Coutsias, Evangelos, Dill, Ken A., Kozakov, Dima

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A new species of rust fungi from the middle Eocene Sakhalinian amber von Hayova, Vera

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Improved prediction of MHC-peptide binding using protein language models von Hashemi, Nasser, Hao, Boran, Ignatov, Mikhail, Paschalidis, Ioannis Ch, Vakili, Pirooz, Vajda, Sandor, Kozakov, Dima

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Protein–Protein and Protein–Peptide Docking with ClusPro Server von Alekseenko, Andrey, Ignatov, Mikhail, Jones, George, Sabitova, Maria, Kozakov, Dima

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Holocene dynamics of a relict moss complex in the Korotovskoe mire (State Complex «Zavidovo», Russia) von Nosova, Maria B., Lapshina, Elena D., Notov, Alexander A., Ignatov, Mikhail S.

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ClusPro FMFT-SAXS: Ultra-fast Filtering Using Small-Angle X-ray Scattering Data in Protein Docking von Ignatov, Mikhail, Kazennov, Andrey, Kozakov, Dima

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Philosophical motives and spiritual imeratives of russian culture (the context of the axiology of creativity) von Lvovna, Anisimova Olga, Leonidovna, Antonova Elena, Olesya Vladimirovna, Resh, Mikhail Ivanovich, Sharabarin, Mikhail Alexandrovich, Ignatov

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ANALYSIS OF FRAGMENTATION OF PLATES OF SYNTHETIC MINERAL ALLOYS UNDER IMPACT OF BALL HIGH VELOCITY BY VISUALIZATION TECHNIQUE von Anna, Ignatova, Mikhail, Nikhamkin, Leonid, Voronov, Mikhail, Ignatov

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ClusPro LigTBM: Automated Template-based Small Molecule Docking von Alekseenko, Andrey, Kotelnikov, Sergei, Ignatov, Mikhail, Egbert, Megan, Kholodov, Yaroslav, Vajda, Sandor, Kozakov, Dima

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High Accuracy Prediction of PROTAC Complex Structures von Ignatov, Mikhail, Jindal, Akhil, Kotelnikov, Sergei, Beglov, Dmitri, Posternak, Ganna, Tang, Xiaojing, Maisonneuve, Pierre, Poda, Gennady, Batey, Robert A., Sicheri, Frank, Whitty, Adrian, Tonge, Peter J., Vajda, Sandor, Kozakov, Dima

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Light-mediated multi-target protein degradation using arylazopyrazole photoswitchable PROTACs (AP-PROTACs) von Zhang, Qisi, Kounde, Cyrille S, Mondal, Milon, Greenfield, Jake L, Baker, Jennifer R, Kotelnikov, Sergei, Ignatov, Mikhail, Tinworth, Christopher P, Zhang, Leran, Conole, Daniel, De Vita, Elena, Kozakov, Dima, McCluskey, Adam, Harling, John D, Fuchter, Matthew J, Tate, Edward W

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Accurate ligand–protein docking in CASP15 using the ClusPro LigTBM server von Kotelnikov, Sergei, Ashizawa, Ryota, Popov, Konstantin I., Khan, Omeir, Ignatov, Mikhail, Li, Stan Xiaogang, Hassan, Mosavverul, Coutsias, Evangelos A., Poda, Gennady, Padhorny, Dzmitry, Tropsha, Alexander, Vajda, Sandor, Kozakov, Dima

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Ligand interaction landscape of transcription factors and essential enzymes in E. coli von Peng, Hui, Kotelnikov, Sergei, Egbert, Megan E., Ofaim, Shany, Stevens, Grant C., Phanse, Sadhna, Saccon, Tatiana, Ignatov, Mikhail, Dutta, Shubham, Istace, Zoe, Moutaoufik, Mohamed Taha, Aoki, Hiroyuki, Kewalramani, Neal, Sun, Jianxian, Gong, Yufeng, Padhorny, Dzmitry, Poda, Gennady, Alekseenko, Andrey, Porter, Kathryn A., Jones, George, Rodionova, Irina, Guo, Hongbo, Pogoutse, Oxana, Datta, Suprama, Saier, Milton, Crovella, Mark, Vajda, Sandor, Moreno-Hagelsieb, Gabriel, Parkinson, John, Segre, Daniel, Babu, Mohan, Kozakov, Dima, Emili, Andrew

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Template‐based modeling by ClusPro in CASP13 and the potential for using co‐evolutionary information in docking von Porter, Kathryn A., Padhorny, Dzmitry, Desta, Israel, Ignatov, Mikhail, Beglov, Dmitri, Kotelnikov, Sergei, Sun, Zhuyezi, Alekseenko, Andrey, Anishchenko, Ivan, Cong, Qian, Ovchinnikov, Sergey, Baker, David, Vajda, Sandor, Kozakov, Dima

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ClusPro in rounds 38 to 45 of CAPRI: Toward combining template‐based methods with free docking von Padhorny, Dzmitry, Porter, Kathryn A., Ignatov, Mikhail, Alekseenko, Andrey, Beglov, Dmitri, Kotelnikov, Sergei, Ashizawa, Ryota, Desta, Israel, Alam, Nawsad, Sun, Zhuyezi, Brini, Emiliano, Dill, Ken, Schueler‐Furman, Ora, Vajda, Sandor, Kozakov, Dima

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Monte Carlo on the manifold and MD refinement for binding pose prediction of protein–ligand complexes: 2017 D3R Grand Challenge von Ignatov, Mikhail, Liu, Cong, Alekseenko, Andrey, Sun, Zhuyezi, Padhorny, Dzmitry, Kotelnikov, Sergei, Kazennov, Andrey, Grebenkin, Ivan, Kholodov, Yaroslav, Kolosvari, Istvan, Perez, Alberto, Dill, Ken, Kozakov, Dima

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MICROFRAGMENTATION OF CAST MICA-CRYSTALLINE MATERIAL UNDER DYNAMIC COMPRESSION von Ignatova, Anna M., Yudin, Мaxim V., Ignatov, Мikhail N., Sokovikov, Мikhail А., Chudinov, Vasiliy V.

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Network Destructive Content And Spiritual Security Of Youth In The Modern Multicultural World von Leonidovna, Antonova Elena, Alekseevich, Antonov Evgeny, Alexandrovich, Ignatov Mikhail, Vladimirovna, Resh Olesya, Sergeevna, Esman Olga, Nikolaevna, Kalinina Galina

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Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment von Lensink, Marc F, Brysbaert, Guillaume, Mauri, Théo, Nadzirin, Nurul, Velankar, Sameer, Chaleil, Raphael A.G, Clarence, Tereza, Bates, Paul A, Kong, Ren, Liu, Bin, Yang, Guangbo, Liu, Ming, Shi, Hang, Lu, Xufeng, Chang, Shan, Roy, Raj S, Liu, Jian, Cheng, Jianlin, Czaplewski, Cezary, Giełdoń, Artur, Kogut, Mateusz, Lipska, Agnieszka G, Liwo, Adam, Lubecka, Emilia A, Maszota-Zieleniak, Martyna, Sieradzan, Adam K, Ślusarz, Rafał, Wesołowski, Patryk A, Zięba, Karolina, Del Carpio Muñoz, Carlos A, Ichiishi, Eiichiro, Gray, Jeffrey J, Bonvin, Alexandre M.J.J, Ambrosetti, Francesco, Vargas Honorato, Rodrigo, Jandova, Zuzana, Jiménez-García, Brian, Koukos, Panagiotis I, Van Keulen, Siri, Van Noort, Charlotte W, Réau, Manon, Roel-Touris, Jorge, Kotelnikov, Sergei, Padhorny, Dzmitry, Porter, Kathryn A, Alekseenko, Andrey, Ignatov, Mikhail, Desta, Israel, Ashizawa, Ryota, Sun, Zhuyezi, Ghani, Usman, Hashemi, Nasser, Vajda, Sandor, Kozakov, Dima, Rodríguez-Lumbreras, Luis A, Fernandez-Recio, Juan, Karczynska, Agnieszka, Yan, Yumeng, Li, Hao, Lin, Peicong, Huang, Sheng You, Christoffer, Charles, Terashi, Genki, Verburgt, Jacob, Sarkar, Daipayan, Aderinwale, Tunde, Wang, Xiao, Kihara, Daisuke, Nakamura, Tsukasa, Hanazono, Yuya, Gowthaman, Ragul, Guest, Johnathan D, Yin, Rui, Taherzadeh, Ghazaleh, Pierce, Brian G, Barradas-Bautista, Didier, Cao, Zhen, Cavallo, Luigi, Sun, Yuanfei, Zhu, Shaowen, Shen, Yang, Park, Taeyong, Woo, Hyeonuk, Yang, Jinsol, Kwon, Sohee, Won, Jonghun, Kiyota, Yasuomi, Kobayashi, Shinpei, Harada, Yoshiki, Takeda-Shitaka, Mayuko, Kundrotas, Petras J, Singh, Amar, Dapkūnas, Justas, Olechnovič, Kliment, Venclovas, Česlovas, Duan, Rui, Qiu, Liming, Xu, Xianjin, Zhang, Shuang, Wodak, Shoshana J

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Ensemble building and statistical mechanics methods for MHC-peptide binding prediction von Grebenkin, Ivan V, Alekseenko, Andrey Evgen'evich, Gaivoronskiy, Nikolay A, Ignatov, Mikhail G, Kazennov, Andrey Maksimovich, Kozakov, Dima V, Kulagin, Andrey P, Kholodov, Yaroslav Aleksandrovich

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