Nonlinear discovery of slow molecular modes using state-free reversible VAMPnets von Chen, Wei, Sidky, Hythem, Ferguson, Andrew L.

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Learning free energy landscapes using artificial neural networks von Sidky, Hythem, Whitmer, Jonathan K.

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High-Resolution Markov State Models for the Dynamics of Trp-Cage Miniprotein Constructed Over Slow Folding Modes Identified by State-Free Reversible VAMPnets von Sidky, Hythem, Chen, Wei, Ferguson, Andrew L

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Capabilities and limitations of time-lagged autoencoders for slow mode discovery in dynamical systems von Chen, Wei, Sidky, Hythem, Ferguson, Andrew L.

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SSAGES: Software Suite for Advanced General Ensemble Simulations von Sidky, Hythem, Colón, Yamil J., Helfferich, Julian, Sikora, Benjamin J., Bezik, Cody, Chu, Weiwei, Giberti, Federico, Guo, Ashley Z., Jiang, Xikai, Lequieu, Joshua, Li, Jiyuan, Moller, Joshua, Quevillon, Michael J., Rahimi, Mohammad, Ramezani-Dakhel, Hadi, Rathee, Vikramjit S., Reid, Daniel R., Sevgen, Emre, Thapar, Vikram, Webb, Michael A., Whitmer, Jonathan K., de Pablo, Juan J.

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Novel elastic response in twist-bend nematic models von Shi, Jiale, Sidky, Hythem, Whitmer, Jonathan K

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Data quality considerations for evaluating COVID-19 treatments using real world data: learnings from the National COVID Cohort Collaborative (N3C) von Sidky, Hythem, Young, Jessica C, Girvin, Andrew T, Lee, Eileen, Shao, Yu Raymond, Hotaling, Nathan, Michael, Sam, Wilkins, Kenneth J, Setoguchi, Soko, Funk, Michele Jonsson

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Explicit Ion Effects on the Charge and Conformation of Weak Polyelectrolytes von Rathee, Vikramjit S, Sidky, Hythem, Sikora, Benjamin J, Whitmer, Jonathan K

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Assessing the effect of selective serotonin reuptake inhibitors in the prevention of post-acute sequelae of COVID-19 von Sidky, Hythem, Hansen, Kristen A, Girvin, Andrew T, Hotaling, Nathan, Michael, Sam G, Gersing, Ken, Sahner, David K

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Automated determination ofn-cyanobiphenyl andn-cyanobiphenyl binary mixtures elastic constants in the nematic phase from molecular simulation von Shi, Jiale, Sidky, Hythem, Whitmer, Jonathan K.

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Molecular latent space simulators von Sidky, Hythem, Chen, Wei, Ferguson, Andrew L

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Daniel Alan Brubaker, Corrections in Early Qurʾānic Manuscripts von Hythem Sidky

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Role of Associative Charging in the Entropy–Energy Balance of Polyelectrolyte Complexes von Rathee, Vikramjit S, Sidky, Hythem, Sikora, Benjamin J, Whitmer, Jonathan K

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Identifying who has long COVID in the USA: a machine learning approach using N3C data von Pfaff, Emily R, Girvin, Andrew T, Bennett, Tellen D, Bhatia, Abhishek, Brooks, Ian M, Deer, Rachel R, Dekermanjian, Jonathan P, Jolley, Sarah Elizabeth, Kahn, Michael G, Kostka, Kristin, McMurry, Julie A, Moffitt, Richard, Walden, Anita, Chute, Christopher G, Haendel, Melissa A, Bramante, Carolyn, Dorr, David, Morris, Michele, Parker, Ann M, Sidky, Hythem, Gersing, Ken, Hong, Stephanie, Niehaus, Emily

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Discovery of Self-Assembling π‑Conjugated Peptides by Active Learning-Directed Coarse-Grained Molecular Simulation von Shmilovich, Kirill, Mansbach, Rachael A, Sidky, Hythem, Dunne, Olivia E, Panda, Sayak Subhra, Tovar, John D, Ferguson, Andrew L

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Elastic response and phase behavior in binary liquid crystal mixturesElectronic supplementary information (ESI) available. See DOI: 10.1039/c5sm03107a von Sidky, Hythem, Whitmer, Jonathan K

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In Silico Measurement of Elastic Moduli of Nematic Liquid Crystals von Sidky, Hythem, de Pablo, Juan J, Whitmer, Jonathan K

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The Emergent Nematic Phase in Ionic Chromonic Liquid Crystals von Sidky, Hythem, Whitmer, Jonathan K

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Weak polyelectrolyte complexation driven by associative charging von Rathee, Vikramjit S., Zervoudakis, Aristotle J., Sidky, Hythem, Sikora, Benjamin J., Whitmer, Jonathan K.

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Adaptive enhanced sampling by force-biasing using neural networks von Guo, Ashley Z., Sevgen, Emre, Sidky, Hythem, Whitmer, Jonathan K., Hubbell, Jeffrey A., de Pablo, Juan J.

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