ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers von Pierce, Brian G, Wiehe, Kevin, Hwang, Howook, Kim, Bong-Hyun, Vreven, Thom, Weng, Zhiping

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Protein-protein docking benchmark version 4.0 von Hwang, Howook, Vreven, Thom, Janin, Joël, Weng, Zhiping

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Structure-based prediction of ligand–protein interactions on a genome-wide scale von Hwang, Howook, Dey, Fabian, Petrey, Donald, Honig, Barry

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Protein-protein docking benchmark version 3.0 von Hwang, Howook, Pierce, Brian, Mintseris, Julian, Janin, Joël, Weng, Zhiping

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Integrating atom‐based and residue‐based scoring functions for protein–protein docking von Vreven, Thom, Hwang, Howook, Weng, Zhiping

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A structure‐based benchmark for protein–protein binding affinity von Kastritis, Panagiotis L., Moal, Iain H., Hwang, Howook, Weng, Zhiping, Bates, Paul A., Bonvin, Alexandre M. J. J., Janin, Joël

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Binding interface prediction by combining protein-protein docking results von Hwang, Howook, Vreven, Thom, Weng, Zhiping

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Prediction of protein–protein binding free energies von Vreven, Thom, Hwang, Howook, Pierce, Brian G., Weng, Zhiping

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Performance of ZDOCK and ZRANK in CAPRI rounds 13-19 von Hwang, Howook, Vreven, Thom, Pierce, Brian G., Hung, Jui-Hung, Weng, Zhiping

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Exploring angular distance in protein-protein docking algorithms von Vreven, Thom, Hwang, Howook, Weng, Zhiping

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The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI von Wiehe, Kevin, Pierce, Brian, Tong, Wei Wei, Hwang, Howook, Mintseris, Julian, Weng, Zhiping

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A hybrid method for protein–protein interface prediction von Hwang, Howook, Petrey, Donald, Honig, Barry

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PrePCI: A structure‐ and chemical similarity‐informed database of predicted protein compound interactions von Trudeau, Stephen J., Hwang, Howook, Mathur, Deepika, Begum, Kamrun, Petrey, Donald, Murray, Diana, Honig, Barry

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Enabling structure-based drug discovery utilizing predicted models von Miller, Edward B., Hwang, Howook, Shelley, Mee, Placzek, Andrew, Rodrigues, João P.G.L.M., Suto, Robert K., Wang, Lingle, Akinsanya, Karen, Abel, Robert

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Template-based prediction of protein function von Petrey, Donald, Chen, T Scott, Deng, Lei, Garzon, Jose Ignacio, Hwang, Howook, Lasso, Gorka, Lee, Hunjoong, Silkov, Antonina, Honig, Barry

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Binding interface prediction by combining protein-protein docking results: Protein Interface Prediction von Hwang, Howook, Vreven, Thom, Weng, Zhiping

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Strategy for Overcoming Crebbp and EP300 Mutations in Lymphoma: Development of First-in-Class HAT Activators von Liu, Yuxuan, Fiorito, Jole, Gonzalez, Yulissa, Estrella, Brian, Calcagno, Elisa, Zuccarello, Elisa, Hwang, Howook, Honig, Barry, Deng, Shixian, Landry, Donald, O'Connor, Owen A., Arancio, Ottavio, Amengual, Jennifer E

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Performance of ZDOCK in CAPRI rounds 20-26 von Vreven, Thom, Pierce, Brian G., Hwang, Howook, Weng, Zhiping

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Evaluating template-based and template-free protein-protein complex structure prediction von Vreven, Thom, Hwang, Howook, Pierce, Brian G, Weng, Zhiping

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A machine learning approach for the prediction of protein surface loop flexibility von Hwang, Howook, Vreven, Thom, Whitfield, Troy W., Wiehe, Kevin, Weng, Zhiping

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