Strand‐specific, high‐resolution mapping of modified RNA polymerase II von Milligan, Laura, Huynh‐Thu, Vân A, Delan‐Forino, Clémentine, Tuck, Alex, Petfalski, Elisabeth, Lombraña, Rodrigo, Sanguinetti, Guido, Kudla, Grzegorz, Tollervey, David

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Gene Regulatory Network Inference: An Introductory Survey von Huynh-Thu, Vân Anh, Sanguinetti, Guido

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Scalable Inference of Ordinary Differential Equation Models of Biochemical Processes von Fröhlich, Fabian, Loos, Carolin, Hasenauer, Jan

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Unsupervised Gene Network Inference with Decision Trees and Random Forests von Huynh-Thu, Vân Anh, Geurts, Pierre

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A Multiattribute Gaussian Graphical Model for Inferring Multiscale Regulatory Networks: An Application in Breast Cancer von Chiquet, Julien, Rigaill, Guillem, Sundqvist, Martina

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Gene Regulatory Networks: A Primer in Biological Processes and Statistical Modelling von Angelin-Bonnet, Olivia, Biggs, Patrick J., Vignes, Matthieu

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Network Inference from Single-Cell Transcriptomic Data von Todorov, Helena, Cannoodt, Robrecht, Saelens, Wouter, Saeys, Yvan

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Statistical Network Inference for Time-Varying Molecular Data with Dynamic Bayesian Networks von Dondelinger, Frank, Mukherjee, Sach

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Causal Queries from Observational Data in Biological Systems via Bayesian Networks: An Empirical Study in Small Networks von White, Alex, Vignes, Matthieu

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Overview and Evaluation of Recent Methods for Statistical Inference of Gene Regulatory Networks from Time Series Data von Grzegorczyk, Marco, Aderhold, Andrej, Husmeier, Dirk

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Tree-Based Learning of Regulatory Network Topologies and Dynamics with Jump3 von Huynh-Thu, Vân Anh, Sanguinetti, Guido

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Learning Differential Module Networks Across Multiple Experimental Conditions von Erola, Pau, Bonnet, Eric, Michoel, Tom

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Integrative Approaches for Inference of Genome-Scale Gene Regulatory Networks von Siahpirani, Alireza Fotuhi, Chasman, Deborah, Roy, Sushmita

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Stability in GRN Inference von Jurman, Giuseppe, Filosi, Michele, Visintainer, Roberto, Riccadonna, Samantha, Furlanello, Cesare

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Inferring Gene Regulatory Networks from Multiple Datasets von Penfold, Christopher A., Gherman, Iulia, Sybirna, Anastasiya, Wild, David L.

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Whole-Transcriptome Causal Network Inference with Genomic and Transcriptomic Data von Wang, Lingfei, Michoel, Tom

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Unsupervised GRN Ensemble von Bellot, Pau, Salembier, Philippe, Pham, Ngoc C., Meyer, Patrick E.

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Wisdom of crowds for robust gene network inference von Marbach, Daniel, Costello, James C, Küffner, Robert, Vega, Nicole M, Prill, Robert J, Camacho, Diogo M, Allison, Kyle R, Kellis, Manolis, Collins, James J, Stolovitzky, Gustavo

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Gene Regulatory Networks: Methods and Protocols

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Gene Regulatory Networks: Methods and Protocols von Sanguinetti, Guido, Huynh-Thu, Vân Anh

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