The effects of sequencing depth on the assembly of coding and noncoding transcripts in the human genome von Babarinde, Isaac Adeyemi, Hutchins, Andrew Paul

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Generation and Analysis of GATA2w/eGFP Human ESCs Reveal ITGB3/CD61 as a Reliable Marker for Defining Hemogenic Endothelial Cells during Hematopoiesis von Huang, Ke, Gao, Jiao, Du, Juan, Ma, Ning, Zhu, Yanling, Wu, Pengfei, Zhang, Tian, Wang, Wenqian, Li, Yuhang, Chen, Qianyu, Hutchins, Andrew Paul, Yang, Zhongzhou, Zheng, Yi, Zhang, Jian, Shan, Yongli, Li, Xuejia, Liao, Baojian, Liu, Jiajun, Wang, Jinyong, Liu, Bing, Pan, Guangjin

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Genome-wide analysis of STAT3 binding in vivo predicts effectors of the anti-inflammatory response in macrophages von Hutchins, Andrew Paul, Poulain, Stéphane, Miranda-Saavedra, Diego

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Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses von Hutchins, Andrew Paul, Takahashi, Yoshiko, Miranda-Saavedra, Diego

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The repertoires of ubiquitinating and deubiquitinating enzymes in eukaryotic genomes von Hutchins, Andrew Paul, Liu, Shaq, Diez, Diego, Miranda-Saavedra, Diego

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Systematic identification of transcriptional regulatory modules from protein-protein interaction networks von Diez, Diego, Hutchins, Andrew Paul, Miranda-Saavedra, Diego

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Distinct transcriptional regulatory modules underlie STAT3's cell type-independent and cell type-specific functions von Hutchins, Andrew Paul, Diez, Diego, Takahashi, Yoshiko, Ahmad, Shandar, Jauch, Ralf, Tremblay, Michel Lucien, Miranda-Saavedra, Diego

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glbase: a framework for combining, analyzing and displaying heterogeneous genomic and high-throughput sequencing data von Hutchins, Andrew Paul, Jauch, Ralf, Dyla, Mateusz, Miranda-Saavedra, Diego

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Remission for Loss of Odontogenic Potential in a New Micromilieu In Vitro von Zheng, Yunfei, Cai, Jinglei, Hutchins, Andrew Paul, Jia, Lingfei, Liu, Pengfei, Yang, Dandan, Chen, Shubin, Ge, Lihong, Pei, Duanqing, Wei, Shicheng

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Transient Activation of Mitoflashes Modulates Nanog at the Early Phase of Somatic Cell Reprogramming von Ying, Zhongfu, Chen, Keshi, Zheng, Lingjun, Wu, Yi, Li, Linpeng, Wang, Rui, Long, Qi, Yang, Liang, Guo, Jingyi, Yao, Deyang, Li, Yong, Bao, Feixiang, Xiang, Ge, Liu, Jinglei, Huang, Qiaoying, Wu, Zhiming, Hutchins, Andrew Paul, Pei, Duanqing, Liu, Xingguo

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Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences von Andrabi, Munazah, Hutchins, Andrew Paul, Miranda-Saavedra, Diego, Kono, Hidetoshi, Nussinov, Ruth, Mizuguchi, Kenji, Ahmad, Shandar

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Where cell fate conversions meet Chinese philosophy von Zheng, Hui, Hutchins, Andrew Paul, Pan, Guangjin, Li, Yinxiong, Pei, Duanqing, Pei, Gang

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Co‐Motif Discovery Identifies an Esrrb‐Sox2‐DNA Ternary Complex as a Mediator of Transcriptional Differences Between Mouse Embryonic and Epiblast Stem Cells von Hutchins, Andrew Paul, Choo, Siew Hua, Mistri, Tapan Kumar, Rahmani, Mehran, Woon, Chow Thai, Keow Leng Ng, Calista, Jauch, Ralf, Robson, Paul

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Genomic and molecular control of cell type and cell type conversions von Fu, Xiuling, He, Fangfang, Li, Yuhao, Shahveranov, Allahverdi, Hutchins, Andrew Paul

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Transposable elements at the center of the crossroads between embryogenesis, embryonic stem cells, reprogramming, and long non-coding RNAs von Hutchins, Andrew Paul, Pei, Duanqing

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Generation and Analysis of GATA2 w/eGFP Human ESCs Reveal ITGB3/CD61 as a Reliable Marker for Defining Hemogenic Endothelial Cells during Hematopoiesis von Huang, Ke, Gao, Jiao, Du, Juan, Ma, Ning, Zhu, Yanling, Wu, Pengfei, Zhang, Tian, Wang, Wenqian, Li, Yuhang, Chen, Qianyu, Hutchins, Andrew Paul, Yang, Zhongzhou, Zheng, Yi, Zhang, Jian, Shan, Yongli, Li, Xuejia, Liao, Baojian, Liu, Jiajun, Wang, Jinyong, Liu, Bing, Pan, Guangjin

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Genomic and computational approaches to dissect the mechanisms of STAT3's universal and cell type-specific functions von Hutchins, Andrew Paul, Diez, Diego, Miranda-Saavedra, Diego

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MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting von Zou, Meng, Duren, Zhana, Yuan, Qiuyue, Li, Henry, Hutchins, Andrew Paul, Wong, Wing Hung, Wang, Yong

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MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting von Zou, Meng, Duren, Zhana, Yuan, Qiuyue, Li, Henry, Hutchins, Andrew Paul, Wong, Wing Hung, Wang, Yong

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The oncogene c-Jun impedes somatic cell reprogramming von Liu, Jing, Han, Qingkai, Peng, Tianran, Peng, Meixiu, Wei, Bei, Li, Dongwei, Wang, Xiaoshan, Yu, Shengyong, Yang, Jiaqi, Cao, Shangtao, Huang, Kaimeng, Hutchins, Andrew Paul, Liu, He, Kuang, Junqi, Zhou, Zhiwei, Chen, Jing, Wu, Haoyu, Guo, Lin, Chen, Yongqiang, Chen, You, Li, Xuejia, Wu, Hongling, Liao, Baojian, He, Wei, Song, Hong, Yao, Hongjie, Pan, Guangjin, Chen, Jiekai, Pei, Duanqing

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