Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks von Huson, Daniel H., Scornavacca, Celine

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MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data von Huson, Daniel H, Beier, Sina, Flade, Isabell, Górska, Anna, El-Hadidi, Mohamed, Mitra, Suparna, Ruscheweyh, Hans-Joachim, Tappu, Rewati

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Application of Phylogenetic Networks in Evolutionary Studies von Huson, Daniel H., Bryant, David

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Characterization of the Gut Microbial Community of Obese Patients Following a Weight-Loss Intervention Using Whole Metagenome Shotgun Sequencing von Louis, Sandrine, Tappu, Rewati-Mukund, Damms-Machado, Antje, Huson, Daniel H, Bischoff, Stephan C

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Integrative analysis of environmental sequences using MEGAN4 von Huson, Daniel H, Mitra, Suparna, Ruscheweyh, Hans-Joachim, Weber, Nico, Schuster, Stephan C

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CREST--classification resources for environmental sequence tags von Lanzén, Anders, Jørgensen, Steffen L, Huson, Daniel H, Gorfer, Markus, Grindhaug, Svenn Helge, Jonassen, Inge, Øvreås, Lise, Urich, Tim

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Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome von Urich, Tim, Lanzén, Anders, Qi, Ji, Huson, Daniel H, Schleper, Christa, Schuster, Stephan C

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Dendroscope: An interactive viewer for large phylogenetic trees von Huson, Daniel H, Richter, Daniel C, Rausch, Christian, Dezulian, Tobias, Franz, Markus, Rupp, Regula

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MEGAN analysis of metagenomic data von Huson, Daniel H, Auch, Alexander F, Qi, Ji, Schuster, Stephan C

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Fast and sensitive protein alignment using DIAMOND von Buchfink, Benjamin, Xie, Chao, Huson, Daniel H

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Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N2O formation von Harter, Johannes, El-Hadidi, Mohamed, Huson, Daniel H., Kappler, Andreas, Behrens, Sebastian

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Effects of Surgical and Dietary Weight Loss Therapy for Obesity on Gut Microbiota Composition and Nutrient Absorption von Bischoff, Stephan C., Königsrainer, Alfred, Meile, Tobias, Kramer, Klaus Michael, Schollenberger, Asja E., Mitra, Suparna, Damms-Machado, Antje, Huson, Daniel H.

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MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs von Huson, Daniel H, Albrecht, Benjamin, Bağcı, Caner, Bessarab, Irina, Górska, Anna, Jolic, Dino, Williams, Rohan B H

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Intestinal Dysbiosis, Barrier Dysfunction, and Bacterial Translocation Account for CKD-Related Systemic Inflammation von Andersen, Kirstin, Kesper, Marie Sophie, Marschner, Julian A, Konrad, Lukas, Ryu, Mi, Kumar Vr, Santhosh, Kulkarni, Onkar P, Mulay, Shrikant R, Romoli, Simone, Demleitner, Jana, Schiller, Patrick, Dietrich, Alexander, Müller, Susanna, Gross, Oliver, Ruscheweyh, Hans-Joachim, Huson, Daniel H, Stecher, Bärbel, Anders, Hans-Joachim

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Human Salivary Amylase Gene Copy Number Impacts Oral and Gut Microbiomes von Poole, Angela C., Goodrich, Julia K., Youngblut, Nicholas D., Luque, Guillermo G., Ruaud, Albane, Sutter, Jessica L., Waters, Jillian L., Shi, Qiaojuan, El-Hadidi, Mohamed, Johnson, Lynn M., Bar, Haim Y., Huson, Daniel H., Booth, James G., Ley, Ruth E.

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Tanglegrams for rooted phylogenetic trees and networks von Scornavacca, Celine, Zickmann, Franziska, Huson, Daniel H.

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MetaSim: a sequencing simulator for genomics and metagenomics von Richter, Daniel C, Ott, Felix, Auch, Alexander F, Schmid, Ramona, Huson, Daniel H

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The Isolate Caproiciproducens sp. 7D4C2 Produces n -Caproate at Mildly Acidic Conditions From Hexoses: Genome and rBOX Comparison With Related Strains and Chain-Elongating Bacteria von Esquivel-Elizondo, Sofia, Bağcı, Caner, Temovska, Monika, Jeon, Byoung Seung, Bessarab, Irina, Williams, Rohan B H, Huson, Daniel H, Angenent, Largus T

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NeighborNet: improved algorithms and implementation von Bryant, David, Huson, Daniel H.

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Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution von Rausch, Christian, Hoof, Ilka, Weber, Tilmann, Wohlleben, Wolfgang, Huson, Daniel H

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