A critical function for transforming growth factor-β, interleukin 23 and proinflammatory cytokines in driving and modulating human T H -17 responses von Zollinger, Raphaël, Bogiatzi, Sofia I, Soumelis, Vassili, Hupé, Philippe, Volpe, Elisabetta, Servant, Nicolas, Barillot, Emmanuel

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Spatiotemporal control of interferon-induced JAK/STAT signalling and gene transcription by the retromer complex von Chmiest, Daniela, Sharma, Nanaocha, Zanin, Natacha, Viaris de Lesegno, Christine, Shafaq-Zadah, Massiullah, Sibut, Vonick, Dingli, Florent, Hupé, Philippe, Wilmes, Stephan, Piehler, Jacob, Loew, Damarys, Johannes, Ludger, Schreiber, Gideon, Lamaze, Christophe

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Live-Cell Chromosome Dynamics and Outcome of X Chromosome Pairing Events during ES Cell Differentiation von Masui, Osamu, Bonnet, Isabelle, Le Baccon, Patricia, Brito, Isabel, Pollex, Tim, Murphy, Niall, Hupé, Philippe, Barillot, Emmanuel, Belmont, Andrew S., Heard, Edith

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A comparison of Sars-Cov-2 vaccine platforms: the CoviCompare project von Molino, Diana, Durier, Christine, Radenne, Anne, Desaint, Corinne, Ropers, Jacques, Courcier, Soizic, Vieillard, Louis Victorien, Rekacewicz, Claire, Parfait, Beatrice, Appay, Victor, Batteux, Frédéric, Barillot, Emmanuel, Cogné, Michel, Combadière, Béhazine, Eberhardt, Christiane S., Gorochov, Guy, Hupé, Philippe, Ninove, Laetitia, Paul, Stéphane, Pellegrin, Isabelle, van der Werf, Sylvie, Lefebvre, Maeva, Botelho-Nevers, Elisabeth, Ortega-Perez, Inmaculada, Jaspard, Marie, Sow, Samba, Lelièvre, Jean Daniel, de Lamballerie, Xavier, Kieny, Marie Paule, Tartour, Eric, Launay, Odile

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Multiparametric analysis of cytokine-driven human Th17 differentiation reveals a differential regulation of IL-17 and IL-22 production von Volpe, Elisabetta, Touzot, Maxime, Servant, Nicolas, Marloie-Provost, Marie-Annick, Hupé, Philippe, Barillot, Emmanuel, Soumelis, Vassili

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Frequent genomic structural alterations at HPV insertion sites in cervical carcinoma von Peter, Martine, Stransky, Nicolas, Couturier, Jérôme, Hupé, Philippe, Barillot, Emmanuel, de Cremoux, Patricia, Cottu, Paul, Radvanyi, Francois, Sastre-Garau, Xavier

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Combinatorial code governing cellular responses to complex stimuli von Cappuccio, Antonio, Zollinger, Raphaël, Schenk, Mirjam, Walczak, Aleksandra, Servant, Nicolas, Barillot, Emmanuel, Hupé, Philippe, Modlin, Robert L., Soumelis, Vassili

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Patient Derived Xenografts (PDX) Models as an Avatar to Assess Personalized Therapy Options in Uveal Melanoma: A Feasibility Study von Nemati, Fariba, de Koning, Leanne, Gentien, David, Assayag, Franck, Henry, Emilie, Ait Rais, Khadija, Pierron, Gaelle, Mariani, Odette, Nijnikoff, Michèle, Champenois, Gabriel, Nicolas, André, Meseure, Didier, Gardrat, Sophie, Servant, Nicolas, Hupé, Philippe, Kamal, Maud, Le Tourneau, Christophe, Piperno-Neumann, Sophie, Rodrigues, Manuel, Roman-Roman, Sergio, Decaudin, Didier, Mariani, Pascale, Cassoux, Nathalie

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A Quantitative Multivariate Model of Human Dendritic Cell-T Helper Cell Communication von Grandclaudon, Maximilien, Perrot-Dockès, Marie, Trichot, Coline, Karpf, Léa, Abouzid, Omar, Chauvin, Camille, Sirven, Philémon, Abou-Jaoudé, Wassim, Berger, Frédérique, Hupé, Philippe, Thieffry, Denis, Sansonnet, Laure, Chiquet, Julien, Lévy-Leduc, Céline, Soumelis, Vassili

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biogitflow: development workflow protocols for bioinformatics pipelines with git and GitLab [version 3; peer review: 2 approved] von Kamoun, Choumouss, Roméjon, Julien, de Soyres, Henri, Gallois, Apolline, Girard, Elodie, Hupé, Philippe

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Using Transcriptional Signatures to Assess Immune Cell Function: From Basic Mechanisms to Immune-Related Disease von Touzot, Maxime, Dahirel, Alix, Cappuccio, Antonio, Segura, Elodie, Hupé, Philippe, Soumelis, Vassili

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Histo‐genomic stratification reveals the frequent amplification/overexpression of CCNE1 and BRD4 genes in non‐BRCAness high grade ovarian carcinoma von Goundiam, Oumou, Gestraud, Pierre, Popova, Tatiana, De la Motte Rouge, Thibault, Fourchotte, Virginie, Gentien, David, Hupé, Philippe, Becette, Véronique, Houdayer, Claude, Roman‐Roman, Sergio, Stern, Marc‐Henri, Sastre‐Garau, Xavier

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Whole-genome profiling helps to classify phyllodes tumours of the breast von Laé, Marick, La Rosa, Philippe, Mandel, Jonas, Reyal, Fabien, Hupé, Philippe, Terrier, Philippe, Couturier, Jérôme

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Search for a Gene Expression Signature of Breast Cancer Local Recurrence in Young Women von SERVANT, Nicolas, BOLLET, Marc A, FOURQUET, Alain, BARTELINK, Harry, BARILLOT, Emmanuel, SIGAL-ZAFRANI, Brigitte, DE VIJVER, Marc J. Van, HALFWERK, Hans, BLEAKLEY, Kevin, KREIKE, Bas, JACOB, Laurent, SIE, Daoud, KERKHOVEN, Ron M, HUPE, Philippe, HADHRI, Rim

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Independent transcriptional reprogramming and apoptosis induction by cisplatin von Galluzzi, Lorenzo, Vitale, Ilio, Senovilla, Laura, Eisenberg, Tobias, Carmona-Gutiérrez, Didac, Vacchelli, Erika, Robert, Thomas, Ripoche, Hugues, Jägemann, Nora, Paccard, Caroline, Servant, Nicolas, Hupé, Philippe, Lazar, Vladimir, Dessen, Philippe, Barillot, Emmanuel, Zischka, Hans, Madeo, Frank, Kroemer, Guido

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QUARTIC: QUick pArallel algoRithms for high-Throughput sequencIng data proCessing [version 3; peer review: 2 approved] von Jarlier, Frédéric, Joly, Nicolas, Fedy, Nicolas, Magalhaes, Thomas, Sirotti, Leonor, Paganiban, Paul, Martin, Firmin, McManus, Michael, Hupé, Philippe

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Geniac: Automatic Configuration GENerator and Installer for nextflow pipelines von Allain, Fabrice, Roméjon, Julien, La Rosa, Philippe, Jarlier, Frédéric, Servant, Nicolas, Hupé, Philippe

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The ERM proteins interact with the HOPS complex to regulate the maturation of endosomes von Chirivino, Dafne, Del Maestro, Laurence, Formstecher, Etienne, Hupé, Philippe, Raposo, Graça, Louvard, Daniel, Arpin, Monique

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Analysis of array CGH data: from signal ratio to gain and loss of DNA regions von Hupé, Philippe, Stransky, Nicolas, Thiery, Jean-Paul, Radvanyi, François, Barillot, Emmanuel

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Extrachromosomal amplification mechanisms in a glioma with amplified sequences from multiple chromosome loci von Gibaud, Anne, Vogt, Nicolas, Hadj-Hamou, Nabila-Sandra, Meyniel, Jean-Philippe, Hupé, Philippe, Debatisse, Michelle, Malfoy, Bernard

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