Integration of gene mutations in risk prognostication for patients receiving first-line immunochemotherapy for follicular lymphoma: a retrospective analysis of a prospective clinic... von Pastore, Alessandro, MD, Jurinovic, Vindi, Dipl Math, Kridel, Robert, MD, Hoster, Eva, PhD, Staiger, Annette M, MSc, Szczepanowski, Monika, PhD, Pott, Christiane, MD, Kopp, Nadja, MSc, Murakami, Mark, MD, Horn, Heike, PhD, Leich, Ellen, PhD, Moccia, Alden A, MD, Mottok, Anja, MD, Sunkavalli, Ashwini, MSc, Van Hummelen, Paul, PhD, Ducar, Matthew, MSc, Ennishi, Daisuke, PhD, Shulha, Hennady P, PhD, Hother, Christoffer, MD, Connors, Joseph M, Prof, Sehn, Laurie H, MD, Dreyling, Martin, Prof, Neuberg, Donna, ScD, Möller, Peter, Prof, Feller, Alfred C, Prof, Hansmann, Martin L, Prof, Stein, Harald, Prof, Rosenwald, Andreas, Prof, Ott, German, Prof, Klapper, Wolfram, Prof, Unterhalt, Michael, PhD, Hiddemann, Wolfgang, Prof, Gascoyne, Randy D, Prof, Weinstock, David M, MD, Weigert, Oliver, Dr

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BreaKmer: detection of structural variation in targeted massively parallel sequencing data using kmers von Abo, Ryan P, Ducar, Matthew, Garcia, Elizabeth P, Thorner, Aaron R, Rojas-Rudilla, Vanesa, Lin, Ling, Sholl, Lynette M, Hahn, William C, Meyerson, Matthew, Lindeman, Neal I, Van Hummelen, Paul, MacConaill, Laura E

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Community Dynamics of Bacteria in Sourdough Fermentations as Revealed by Their Metatranscriptome von Weckx, Stefan, Van der Meulen, Roel, Allemeersch, Joke, Huys, Geert, Vandamme, Peter, Van Hummelen, Paul, De Vuyst, Luc

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Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes von Chapuy, Bjoern, Stewart, Chip, Dunford, Andrew J., Kim, Jaegil, Kamburov, Atanas, Redd, Robert A., Lawrence, Mike S., Roemer, Margaretha G. M., Li, Amy J., Ziepert, Marita, Staiger, Annette M., Wala, Jeremiah A., Ducar, Matthew D., Leshchiner, Ignaty, Rheinbay, Ester, Taylor-Weiner, Amaro, Coughlin, Caroline A., Hess, Julian M., Pedamallu, Chandra S., Livitz, Dimitri, Rosebrock, Daniel, Rosenberg, Mara, Tracy, Adam A., Horn, Heike, van Hummelen, Paul, Feldman, Andrew L., Link, Brian K., Novak, Anne J., Cerhan, James R., Habermann, Thomas M., Siebert, Reiner, Rosenwald, Andreas, Thorner, Aaron R., Meyerson, Matthew L., Golub, Todd R., Beroukhim, Rameen, Wulf, Gerald G., Ott, German, Rodig, Scott J., Monti, Stefano, Neuberg, Donna S., Loeffler, Markus, Pfreundschuh, Michael, Trümper, Lorenz, Getz, Gad, Shipp, Margaret A.

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RNA Amplification Results in Reproducible Microarray Data with Slight Ratio Bias von Puskás, László G, Zvara, Ágnes, Hackler, László, Hummelen, Paul Van

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Metatranscriptome Analysis for Insight into Whole-Ecosystem Gene Expression during Spontaneous Wheat and Spelt Sourdough Fermentations von Weckx, Stefan, Allemeersch, Joke, Van der Meulen, Roel, Vrancken, Gino, Huys, Geert, Vandamme, Peter, Van Hummelen, Paul, De Vuyst, Luc

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Genomic Characterization of Brain Metastases Reveals Branched Evolution and Potential Therapeutic Targets von Brastianos, Priscilla K, Carter, Scott L, Santagata, Sandro, Cahill, Daniel P, Taylor-Weiner, Amaro, Jones, Robert T, Van Allen, Eliezer M, Lawrence, Michael S, Horowitz, Peleg M, Cibulskis, Kristian, Ligon, Keith L, Tabernero, Josep, Seoane, Joan, Martinez-Saez, Elena, Curry, William T, Dunn, Ian F, Paek, Sun Ha, Park, Sung-Hye, McKenna, Aaron, Chevalier, Aaron, Rosenberg, Mara, Barker, 2nd, Frederick G, Gill, Corey M, Van Hummelen, Paul, Thorner, Aaron R, Johnson, Bruce E, Hoang, Mai P, Choueiri, Toni K, Signoretti, Sabina, Sougnez, Carrie, Rabin, Michael S, Lin, Nancy U, Winer, Eric P, Stemmer-Rachamimov, Anat, Meyerson, Matthew, Garraway, Levi, Gabriel, Stacey, Lander, Eric S, Beroukhim, Rameen, Batchelor, Tracy T, Baselga, Jose, Louis, David N, Getz, Gad, Hahn, William C

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MAP2K1 and MAP3K1 mutations in langerhans cell histiocytosis von Nelson, David S., van Halteren, Astrid, Quispel, Willemijn T., van den Bos, Cor, Bovée, Judith V.M.G., Patel, Bhumi, Badalian-Very, Gayane, van Hummelen, Paul, Ducar, Matthew, Lin, Ling, MacConaill, Laura E., Egeler, R. Maarten, Rollins, Barrett J.

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Targetable genetic features of primary testicular and primary central nervous system lymphomas von Chapuy, Bjoern, Roemer, Margaretha G.M., Stewart, Chip, Tan, Yuxiang, Abo, Ryan P., Zhang, Liye, Dunford, Andrew J., Meredith, David M., Thorner, Aaron R., Jordanova, Ekaterina S., Liu, Gang, Feuerhake, Friedrich, Ducar, Matthew D., Illerhaus, Gerald, Gusenleitner, Daniel, Linden, Erica A., Sun, Heather H., Homer, Heather, Aono, Miyuki, Pinkus, Geraldine S., Ligon, Azra H., Ligon, Keith L., Ferry, Judith A., Freeman, Gordon J., van Hummelen, Paul, Golub, Todd R., Getz, Gad, Rodig, Scott J., de Jong, Daphne, Monti, Stefano, Shipp, Margaret A.

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Genomic sequencing of meningiomas identifies oncogenic SMO and AKT1 mutations von Brastianos, Priscilla K, Horowitz, Peleg M, Santagata, Sandro, Jones, Robert T, McKenna, Aaron, Getz, Gad, Ligon, Keith L, Palescandolo, Emanuele, Van Hummelen, Paul, Ducar, Matthew D, Raza, Alina, Sunkavalli, Ashwini, MacConaill, Laura E, Stemmer-Rachamimov, Anat O, Louis, David N, Hahn, William C, Dunn, Ian F, Beroukhim, Rameen

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MYB-QKI rearrangements in angiocentric glioma drive tumorigenicity through a tripartite mechanism von Bandopadhayay, Pratiti, Ramkissoon, Lori A, Jain, Payal, Bergthold, Guillaume, Wala, Jeremiah, Zeid, Rhamy, Schumacher, Steven E, Urbanski, Laura, O'Rourke, Ryan, Gibson, William J, Pelton, Kristine, Ramkissoon, Shakti H, Han, Harry J, Zhu, Yuankun, Choudhari, Namrata, Silva, Amanda, Boucher, Katie, Henn, Rosemary E, Kang, Yun Jee, Knoff, David, Paolella, Brenton R, Gladden-Young, Adrianne, Varlet, Pascale, Pages, Melanie, Horowitz, Peleg M, Federation, Alexander, Malkin, Hayley, Tracy, Adam A, Seepo, Sara, Ducar, Matthew, Van Hummelen, Paul, Santi, Mariarita, Buccoliero, Anna Maria, Scagnet, Mirko, Bowers, Daniel C, Giannini, Caterina, Puget, Stephanie, Hawkins, Cynthia, Tabori, Uri, Klekner, Almos, Bognar, Laszlo, Burger, Peter C, Eberhart, Charles, Rodriguez, Fausto J, Hill, D Ashley, Mueller, Sabine, Haas-Kogan, Daphne A, Phillips, Joanna J, Santagata, Sandro, Stiles, Charles D, Bradner, James E, Jabado, Nada, Goren, Alon, Grill, Jacques, Ligon, Azra H, Goumnerova, Liliana, Waanders, Angela J, Storm, Phillip B, Kieran, Mark W, Ligon, Keith L, Beroukhim, Rameen, Resnick, Adam C

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Oncogenic Mutations in Cervical Cancer: Genomic Differences Between Adenocarcinomas and Squamous Cell Carcinomas of the Cervix von WRIGHT, Alexi A, HOWITT, Brooke E, QUICK, Charles M, LAURY, Anna, KATZ, Ingrid T, HAHN, William C, MATULONIS, Ursula A, HIRSCH, Michelle S, MYERS, Andrea P, DAHLBERG, Suzanne E, PALESCANDOLO, Emanuele, VAN HUMMELEN, Paul, MACCONAILL, Laura E, SHONI, Melina, WAGLE, Nikhil, JONES, Robert T

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Somatic activating ARAF mutations in Langerhans cell histiocytosis von Nelson, David S., Quispel, Willemijn, Badalian-Very, Gayane, van Halteren, Astrid G.S., van den Bos, Cor, Bovée, Judith V.M.G., Tian, Sara Y., Van Hummelen, Paul, Ducar, Matthew, MacConaill, Laura E., Egeler, R. Maarten, Rollins, Barrett J.

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High-throughput detection of actionable genomic alterations in clinical tumor samples by targeted, massively parallel sequencing von Wagle, Nikhil, Berger, Michael F, Davis, Matthew J, Blumenstiel, Brendan, Defelice, Matthew, Pochanard, Panisa, Ducar, Matthew, Van Hummelen, Paul, Macconaill, Laura E, Hahn, William C, Meyerson, Matthew, Gabriel, Stacey B, Garraway, Levi A

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Exploratory genomic analysis of high-grade neuroendocrine neoplasms across diverse primary sites von Sun, Thomas Yang, Zhao, Lan, Van Hummelen, Paul, Martin, Brock, Hornbacker, Kathleen, Lee, HoJoon, Xia, Li C, Padda, Sukhmani K, Ji, Hanlee P, Kunz, Pamela

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Germline and somatic BAP1 mutations in high-grade rhabdoid meningiomas von Shankar, Ganesh M, Abedalthagafi, Malak, Vaubel, Rachael A, Merrill, Parker H, Nayyar, Naema, Gill, Corey M, Brewster, Ryan, Bi, Wenya Linda, Agarwalla, Pankaj K, Thorner, Aaron R, Reardon, David A, Al-Mefty, Ossama, Wen, Patrick Y, Alexander, Brian M, van Hummelen, Paul, Batchelor, Tracy T, Ligon, Keith L, Ligon, Azra H, Meyerson, Matthew, Dunn, Ian F, Beroukhim, Rameen, Louis, David N, Perry, Arie, Carter, Scott L, Giannini, Caterina, Curry, Jr, William T, Cahill, Daniel P, Barker, 2nd, Frederick G, Brastianos, Priscilla K, Santagata, Sandro

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Preexisting oncogenic events impact trastuzumab sensitivity in ERBB2-amplified gastroesophageal adenocarcinoma von Kim, Jihun, Fox, Cameron, Peng, Shouyong, Pusung, Mark, Pectasides, Eirini, Matthee, Eric, Hong, Yong Sang, Do, In-Gu, Jang, Jiryeon, Thorner, Aaron R, Van Hummelen, Paul, Rustgi, Anil K, Wong, Kwok-Kin, Zhou, Zhongren, Tang, Ping, Kim, Kyoung-Mee, Lee, Jeeyun, Bass, Adam J

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Development and Validation of a Species-Independent Functional Gene Microarray That Targets Lactic Acid Bacteria von Weckx, Stefan, Allemeersch, Joke, Van der Meulen, Roel, Vrancken, Gino, Huys, Geert, Vandamme, Peter, Van Hummelen, Paul, De Vuyst, Luc

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Meiotic susceptibility for induction of sperm with chromosomal aberrations in patients receiving combination chemotherapy for Hodgkin lymphoma von Frias, Sara, Van Hummelen, Paul, Meistrich, Marvin L, Wyrobek, Andrew J

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Genomic analysis of diffuse pediatric low-grade gliomas identifies recurrent oncogenic truncating rearrangements in the transcription factor MYBL1 von Ramkissoon, Lori A., Horowitz, Peleg M., Craig, Justin M., Ramkissoon, Shakti H., Rich, Benjamin E., Schumacher, Steven E., McKenna, Aaron, Lawrence, Michael S., Bergthold, Guillaume, Brastianos, Priscilla K., Tabak, Barbara, Ducar, Matthew D., Van Hummelen, Paul, MacConaill, Laura E., Pouissant-Young, Tina, Cho, Yoon-Jae, Taha, Hala, Mahmoud, Madeha, Bowers, Daniel C., Margraf, Linda, Tabori, Uri, Hawkins, Cynthia, Packer, Roger J., Hill, D. Ashley, Pomeroy, Scott L., Eberhart, Charles G., Dunn, Ian F., Goumnerova, Liliana, Getz, Gad, Chan, Jennifer A., Santagata, Sandro, Hahn, William C., Stiles, Charles D., Ligon, Azra H., Kieran, Mark W., Beroukhim, Rameen, Ligon, Keith L.

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