High-Sensitivity Measurements of Multiple Kinase Activities in Live Single Cells von Regot, Sergi, Hughey, Jacob J., Bajar, Bryce T., Carrasco, Silvia, Covert, Markus W.

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Releasing a preprint is associated with more attention and citations for the peer-reviewed article von Fu, Darwin Y, Hughey, Jacob J

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Robust meta-analysis of gene expression using the elastic net von Hughey, Jacob J, Butte, Atul J

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Eating breakfast and avoiding late-evening snacking sustains lipid oxidation von Kelly, Kevin Parsons, McGuinness, Owen P, Buchowski, Maciej, Hughey, Jacob J, Chen, Heidi, Powers, James, Page, Terry, Johnson, Carl Hirschie

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LimoRhyde2: Genomic analysis of biological rhythms based on effect sizes von Obodo, Dora, Outland, Elliot H, Hughey, Jacob J

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Machine learning identifies a compact gene set for monitoring the circadian clock in human blood von Hughey, Jacob J

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Automated quality control and cell identification of droplet-based single-cell data using dropkick von Heiser, Cody N, Wang, Victoria M, Chen, Bob, Hughey, Jacob J, Lau, Ken S

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Live-cell measurements of kinase activity in single cells using translocation reporters von Kudo, Takamasa, Jeknić, Stevan, Macklin, Derek N, Akhter, Sajia, Hughey, Jacob J, Regot, Sergi, Covert, Markus W

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Evidence for widespread dysregulation of circadian clock progression in human cancer von Shilts, Jarrod, Chen, Guanhua, Hughey, Jacob J

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The risks of using the chi-square periodogram to estimate the period of biological rhythms von Tackenberg, Michael C, Hughey, Jacob J

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Differential Phasing between Circadian Clocks in the Brain and Peripheral Organs in Humans von Hughey, Jacob J., Butte, Atul J.

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The seeker R package: simplified fetching and processing of transcriptome data von Schoenbachler, Joshua L, Hughey, Jacob J

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Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record von Hughey, Jacob J, Rhoades, Seth D, Fu, Darwin Y, Bastarache, Lisa, Denny, Joshua C, Chen, Qingxia

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pmparser and PMDB: resources for large-scale, open studies of the biomedical literature von Schoenbachler, Joshua L, Hughey, Jacob J

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The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants von Aref, Layla, Bastarache, Lisa, Hughey, Jacob J

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Self-reported dietary adherence, disease-specific symptoms, and quality of life are associated with healthcare provider follow-up in celiac disease von Hughey, Jacob J, Ray, Bonnie K, Lee, Anne R, Voorhees, Kristin N, Kelly, Ciaran P, Schuppan, Detlef

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Simphony: simulating large-scale, rhythmic data von Singer, Jordan M, Fu, Darwin Y, Hughey, Jacob J

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ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system von Hughey, Jacob J, Hastie, Trevor, Butte, Atul J

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Single-cell NF- B dynamics reveal digital activation and analogue information processing von Lipniacki, Tomasz, Quake, Stephen R, Covert, Markus W, Tay, Sava, Hughey, Jacob J, Lee, Timothy K

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Discovering Cross-Reactivity in Urine Drug Screening Immunoassays through Large-Scale Analysis of Electronic Health Records von Hughey, Jacob J, Colby, Jennifer M

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