Human MX2 is an interferon-induced post-entry inhibitor of HIV-1 infection von Goujon, Caroline, Moncorgé, Olivier, Bauby, Hélène, Doyle, Tomas, Ward, Christopher C., Schaller, Torsten, Hué, Stéphane, Barclay, Wendy S., Schulz, Reiner, Malim, Michael H.

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Compensatory Mutation Partially Restores Fitness and Delays Reversion of Escape Mutation within the Immunodominant HLA-B5703-Restricted Gag Epitope in Chronic Human Immunodeficienc... von CRAWFORD, Hayley, PRADO, Julia G, MULLINS, James I, KASLOW, Richard, GOEPFERT, Paul, ALLEN, Susan, HUNTER, Eric, MULENGA, Joseph, KIEPIELA, Photini, WALKER, Bruce D, GOULDER, Philip J. R, LESLIE, Alasdair, HUE, Stéphane, HONEYBORNE, Isobella, REDDY, Sharon, VAN DER STOK, Mary, MNCUBE, Zenele, BRANDER, Christian, ROUSSEAU, Christine

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Effectiveness of isolation, testing, contact tracing, and physical distancing on reducing transmission of SARS-CoV-2 in different settings: a mathematical modelling study von Kucharski, Adam J, Klepac, Petra, Conlan, Andrew J K, Kissler, Stephen M, Tang, Maria L, Fry, Hannah, Gog, Julia R, Edmunds, W John, Emery, Jon C, Medley, Graham, Munday, James D, Russell, Timothy W, Leclerc, Quentin J, Diamond, Charlie, Procter, Simon R, Gimma, Amy, Sun, Fiona Yueqian, Gibbs, Hamish P, Rosello, Alicia, van Zandvoort, Kevin, Hué, Stéphane, Meakin, Sophie R, Deol, Arminder K, Knight, Gwen, Jombart, Thibaut, Foss, Anna M, Bosse, Nikos I, Atkins, Katherine E, Quilty, Billy J, Lowe, Rachel, Prem, Kiesha, Flasche, Stefan, Pearson, Carl A B, Houben, Rein M G J, Nightingale, Emily S, Endo, Akira, Tully, Damien C, Liu, Yang, Villabona-Arenas, Julian, O'Reilly, Kathleen, Funk, Sebastian, Eggo, Rosalind M, Jit, Mark, Rees, Eleanor M, Hellewell, Joel, Clifford, Samuel, Jarvis, Christopher I, Abbott, Sam, Auzenbergs, Megan, Davies, Nicholas G, Simons, David

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Using machine learning and big data to explore the drug resistance landscape in HIV von Blassel, Luc, Tostevin, Anna, Villabona-Arenas, Christian Julian, Peeters, Martine, Hué, Stéphane, Gascuel, Olivier

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HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency von Schaller, Torsten, Ocwieja, Karen E, Rasaiyaah, Jane, Price, Amanda J, Brady, Troy L, Roth, Shoshannah L, Hué, Stéphane, Fletcher, Adam J, Lee, KyeongEun, KewalRamani, Vineet N, Noursadeghi, Mahdad, Jenner, Richard G, James, Leo C, Bushman, Frederic D, Towers, Greg J

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Characterization update of HIV-1 M subtypes diversity and proposal for subtypes A and D sub-subtypes reclassification von Désiré, Nathalie, Cerutti, Lorenzo, Le Hingrat, Quentin, Perrier, Marine, Emler, Stefan, Calvez, Vincent, Descamps, Diane, Marcelin, Anne-Geneviève, Hué, Stéphane, Visseaux, Benoit

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Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves von Lindsey, Benjamin B, Villabona-Arenas, Ch Julián, Campbell, Finlay, Keeley, Alexander J, Parker, Matthew D, Shah, Dhruv R, Parsons, Helena, Zhang, Peijun, Kakkar, Nishchay, Gallis, Marta, Foulkes, Benjamin H, Wolverson, Paige, Louka, Stavroula F, Christou, Stella, State, Amy, Johnson, Katie, Raza, Mohammad, Hsu, Sharon, Jombart, Thibaut, Cori, Anne, Evans, Cariad M, Partridge, David G, Atkins, Katherine E, Hué, Stéphane, de Silva, Thushan I

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Emergence of Novel Norovirus GII.4 Variant von Chhabra, Preeti, Tully, Damien C, Mans, Janet, Niendorf, Sandra, Barclay, Leslie, Cannon, Jennifer L, Montmayeur, Anna M, Pan, Chao-Yang, Page, Nicola, Williams, Rachel, Tutill, Helena, Roy, Sunando, Celma, Cristina, Beard, Stuart, Mallory, Michael L, Manouana, Gédéon Prince, Velavan, Thirumalaisamy P, Adegnika, Ayola Akim, Kremsner, Peter G, Lindesmith, Lisa C, Hué, Stéphane, Baric, Ralph S, Breuer, Judith, Vinjé, Jan

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Mutation of a single residue renders human tetherin resistant to HIV-1 Vpu-mediated depletion von Gupta, Ravindra K, Hué, Stéphane, Schaller, Torsten, Verschoor, Ernst, Pillay, Deenan, Towers, Greg J

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Sustained Low-Level Transmission of Zika and Chikungunya Viruses after Emergence in the Fiji Islands von Kama, Mike, Aubry, Maite, Naivalu, Taina, Vanhomwegen, Jessica, Mariteragi-Helle, Teheipuaura, Teissier, Anita, Paoaafaite, Tuterarii, Hué, Stéphane, Hibberd, Martin L, Manuguerra, Jean-Claude, Christi, Ketan, Watson, Conall H, Nilles, Eric J, Aaskov, John, Lau, Colleen L, Musso, Didier, Kucharski, Adam J, Cao-Lormeau, Van-Mai

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Could prophylactic antivirals reduce dengue incidence in a high-prevalence endemic area? von Jafari, Yalda, Brady, Oliver J, Biggs, Joseph R, Lien, Le Thuy, Mai, Huynh Kim, Nguyen, Hien Anh Thi, Van Loock, Marnix, Herrera-Taracena, Guillermo, Menten, Joris, Iwasaki, Chihiro, Takegata, Mizuki, Kitamura, Noriko, Do Thai, Hung, Minh, Bui Xuan, Morita, Kouichi, Anh, Dang Duc, Clifford, Sam, Prem, Kiesha, Hafalla, Julius, Edmunds, W John, Yoshida, Lay Myint, Hibberd, Martin L, Hué, Stéphane

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Disease-associated XMRV sequences are consistent with laboratory contamination von Hué, Stéphane, Gray, Eleanor R, Gall, Astrid, Katzourakis, Aris, Tan, Choon Ping, Houldcroft, Charlotte J, McLaren, Stuart, Pillay, Deenan, Futreal, Andrew, Garson, Jeremy A, Pybus, Oliver G, Kellam, Paul, Towers, Greg J

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Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters von Ragonnet-Cronin, Manon, Lycett, Samantha J., Hodcroft, Emma B., Hué, Stéphane, Fearnhill, Esther, Brown, Alison E., Delpech, Valerie, Dunn, David, Brown, Andrew J. Leigh

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HIV-1 Group P is unable to antagonize human tetherin by Vpu, Env or Nef von Sauter, Daniel, Hué, Stéphane, Petit, Sarah J, Plantier, Jean-Christophe, Towers, Greg J, Kirchhoff, Frank, Gupta, Ravindra K

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Case-area targeted interventions (CATI) for reactive dengue control: Modelling effectiveness of vector control and prophylactic drugs in Singapore von Brady, Oliver J, Kucharski, Adam J, Funk, Sebastian, Jafari, Yalda, Loock, Marnix Van, Herrera-Taracena, Guillermo, Menten, Joris, Edmunds, W John, Sim, Shuzhen, Ng, Lee-Ching, Hué, Stéphane, Hibberd, Martin L

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Genetic Analysis Reveals the Complex Structure of HIV-1 Transmission within Defined Risk Groups von Hué, Stéphane, Pillay, Deenan, Clewley, Jonathan P., Pybus, Oliver G., Singer, Burton H.

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Hare TRIM5α Restricts Divergent Retroviruses and Exhibits Significant Sequence Variation from Closely Related Lagomorpha TRIM5 Genes von Fletcher, Adam J, Hué, Stéphane, Schaller, Torsten, Pillay, Deenan, Towers, Greg J

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High clustering of acute HCV infections and high rate of associated STIs among Parisian HIV-positive male patients von Todesco, Eve, Day, Nesrine, Amiel, Corinne, Elaerts, Stéphane, Schneider, Véronique, Roudière, Laurent, Hué, Stéphane, Liotier, Jean-Yves, Bottero, Julie, L'Yavanc, Thomas, Ohayon, Michel, Gosset, Daniel, Thibault, Vincent, Surgers, Laure, Chas, Julie, Akhavan, Sepideh, Velter, Annie, Katlama, Christine, Kreplak, Georges, Marcelin, Anne-Geneviève, Valantin, Marc-Antoine

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Evaluating methods for identifying and quantifying Streptococcus pneumoniae co-colonization using next-generation sequencing data von Hackman, Jada, Hibberd, Martin L, Swarthout, Todd D, Hinds, Jason, Ashall, James, Sheppard, Carmen, Tonkin-Hill, Gerry, Gould, Kate, Brown, Comfort, Msefula, Jacquline, Mataya, Andrew A, Toizumi, Michiko, Yoshida, Lay-Myint, French, Neil, Heyderman, Robert S, Flasche, Stefan, Kwambana, Brenda, Hué, Stéphane

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Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves von Lindsey, Benjamin B., Villabona-Arenas, Ch. Julián, Campbell, Finlay, Keeley, Alexander J., Parker, Matthew D., Shah, Dhruv R., Parsons, Helena, Zhang, Peijun, Kakkar, Nishchay, Gallis, Marta, Foulkes, Benjamin H., Wolverson, Paige, Louka, Stavroula F., Christou, Stella, State, Amy, Johnson, Katie, Raza, Mohammad, Hsu, Sharon, Jombart, Thibaut, Cori, Anne, Evans, Cariad M., Partridge, David G., Atkins, Katherine E., Hué, Stéphane, de Silva, Thushan I.

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