Translation is an emerging constraint on protein homeostasis in ageing von Llewellyn, Jack, Hubbard, Simon J., Swift, Joe

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Global mRNA selection mechanisms for translation initiation von Costello, Joseph, Castelli, Lydia M, Rowe, William, Kershaw, Christopher J, Talavera, David, Mohammad-Qureshi, Sarah S, Sims, Paul F G, Grant, Christopher M, Pavitt, Graham D, Hubbard, Simon J, Ashe, Mark P

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Loss of regulation of protein synthesis and turnover underpins an attenuated stress response in senescent human mesenchymal stem cells von Llewellyn, Jack, Mallikarjun, Venkatesh, Appleton, Ellen, Osipova, Maria, Gilbert, Hamish T J, Richardson, Stephen M, Hubbard, Simon J, Swift, Joe

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Paralogous translation factors target distinct mRNAs to differentially regulate tolerance to oxidative stress in yeast von Cunningham, Joanne, Sfakianos, Aristeidis P, Kritsiligkou, Paraskevi, Kershaw, Christopher J, Whitmarsh, Alan J, Hubbard, Simon J, Ashe, Mark P, Grant, Chris M

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Proteogenomic Gene Structure Validation in the Pineapple Genome von Ariffin, Norazrin, Newman, David Wells, Nelson, Michael G., O’cualain, Ronan, Hubbard, Simon J.

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CONSeQuence: Prediction of Reference Peptides for Absolute Quantitative Proteomics Using Consensus Machine Learning Approaches von Eyers, Claire E., Lawless, Craig, Wedge, David C., Lau, King Wai, Gaskell, Simon J., Hubbard, Simon J.

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Addressing Statistical Biases in Nucleotide-Derived Protein Databases for Proteogenomic Search Strategies von Blakeley, Paul, Overton, Ian M, Hubbard, Simon J

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Understanding the Role of Yeast Yme1 in Mitochondrial Function Using Biochemical and Proteomics Analyses von Kan, Kwan Ting, Nelson, Michael G, Grant, Chris M, Hubbard, Simon J, Lu, Hui

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Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis von Soanes, Darren M, Alam, Intikhab, Cornell, Mike, Wong, Han Min, Hedeler, Cornelia, Paton, Norman W, Rattray, Magnus, Hubbard, Simon J, Oliver, Stephen G, Talbot, Nicholas J

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Isoform-specific sequestration of protein kinase A fine-tunes intracellular signaling during heat stress von Creamer, Declan R., Beynon, Robert J., Hubbard, Simon J., Ashe, Mark P., Grant, Chris M.

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Cytosolic aspartate aminotransferase moonlights as a ribosome-binding modulator of Gcn2 activity during oxidative stress von Crawford, Robert A, Ashe, Mark P, Hubbard, Simon J, Pavitt, Graham D

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The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results von Jones, Andrew R., Eisenacher, Martin, Mayer, Gerhard, Kohlbacher, Oliver, Siepen, Jennifer, Hubbard, Simon J., Selley, Julian N., Searle, Brian C., Shofstahl, James, Seymour, Sean L., Julian, Randall, Binz, Pierre-Alain, Deutsch, Eric W., Hermjakob, Henning, Reisinger, Florian, Griss, Johannes, Vizcaíno, Juan Antonio, Chambers, Matthew, Pizarro, Angel, Creasy, David

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Global Translational Responses to Oxidative Stress Impact upon Multiple Levels of Protein Synthesis von Shenton, Daniel, Smirnova, Julia B., Selley, Julian N., Carroll, Kathleen, Hubbard, Simon J., Pavitt, Graham D., Ashe, Mark P., Grant, Chris M.

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Direct and Absolute Quantification of over 1800 Yeast Proteins via Selected Reaction Monitoring von Lawless, Craig, Holman, Stephen W., Brownridge, Philip, Lanthaler, Karin, Harman, Victoria M., Watkins, Rachel, Hammond, Dean E., Miller, Rebecca L., Sims, Paul F.G., Grant, Christopher M., Eyers, Claire E., Beynon, Robert J., Hubbard, Simon J.

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Prediction of Missed Proteolytic Cleavages for the Selection of Surrogate Peptides for Quantitative Proteomics von Lawless, Craig, Hubbard, Simon J.

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Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies von Elsemman, Ibrahim E., Rodriguez Prado, Angelica, Grigaitis, Pranas, Garcia Albornoz, Manuel, Harman, Victoria, Holman, Stephen W., van Heerden, Johan, Bruggeman, Frank J., Bisschops, Mark M. M., Sonnenschein, Nikolaus, Hubbard, Simon, Beynon, Rob, Daran-Lapujade, Pascale, Nielsen, Jens, Teusink, Bas

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The yeast La related protein Slf1p is a key activator of translation during the oxidative stress response von Kershaw, Christopher J, Costello, Joseph L, Castelli, Lydia M, Talavera, David, Rowe, William, Sims, Paul F G, Ashe, Mark P, Hubbard, Simon J, Pavitt, Graham D, Grant, Chris M

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Analysis of Intrinsic Peptide Detectability via Integrated Label-Free and SRM-Based Absolute Quantitative Proteomics von Jarnuczak, Andrew F, Lee, Dave C. H, Lawless, Craig, Holman, Stephen W, Eyers, Claire E, Hubbard, Simon J

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Dynamic changes in eIF4F-mRNA interactions revealed by global analyses of environmental stress responses von Costello, Joseph L, Kershaw, Christopher J, Castelli, Lydia M, Talavera, David, Rowe, William, Sims, Paul F G, Ashe, Mark P, Grant, Christopher M, Hubbard, Simon J, Pavitt, Graham D

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Global absolute quantification of a proteome: Challenges in the deployment of a QconCAT strategy von Brownridge, Philip, Holman, Stephen W., Gaskell, Simon J., Grant, Christopher M., Harman, Victoria M., Hubbard, Simon J., Lanthaler, Karin, Lawless, Craig, O'cualain, Ronan, Sims, Paul, Watkins, Rachel, Beynon, Robert J.

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