BRIE: transcriptome-wide splicing quantification in single cells von Huang, Yuanhua, Sanguinetti, Guido

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Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference von Huang, Yuanhua, McCarthy, Davis J, Stegle, Oliver

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UniTVelo: temporally unified RNA velocity reinforces single-cell trajectory inference von Gao, Mingze, Qiao, Chen, Huang, Yuanhua

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BRIE2: computational identification of splicing phenotypes from single-cell transcriptomic experiments von Huang, Yuanhua, Sanguinetti, Guido

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SpatialDM for rapid identification of spatially co-expressed ligand–receptor and revealing cell–cell communication patterns von Li, Zhuoxuan, Wang, Tianjie, Liu, Pentao, Huang, Yuanhua

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CamoTSS: analysis of alternative transcription start sites for cellular phenotypes and regulatory patterns from 5' scRNA-seq data von Hou, Ruiyan, Hon, Chung-Chau, Huang, Yuanhua

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Cellsnp-lite: an efficient tool for genotyping single cells von Huang, Xianjie, Huang, Yuanhua

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Multiplexed bulk and single-cell RNA-seq hybrid enables cost-efficient disease modeling with chimeric organoids von Cheng, Chen, Wang, Gang, Zhu, Yuqing, Wu, Hangdi, Zhang, Li, Liu, Zhihong, Huang, Yuanhua, Zhang, Jin

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MQuad enables clonal substructure discovery using single cell mitochondrial variants von Kwok, Aaron Wing Cheung, Qiao, Chen, Huang, Rongting, Sham, Mai-Har, Ho, Joshua W. K., Huang, Yuanhua

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Author Correction: Multiplexed bulk and single-cell RNA-seq hybrid enables cost-efficient disease modeling with chimeric organoids von Cheng, Chen, Wang, Gang, Zhu, Yuqing, Wu, Hangdi, Zhang, Li, Liu, Zhihong, Huang, Yuanhua, Zhang, Jin

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DCATS: differential composition analysis for flexible single-cell experimental designs von Lin, Xinyi, Chau, Chuen, Ma, Kun, Huang, Yuanhua, Ho, Joshua W K

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Robust analysis of allele-specific copy number alterations from scRNA-seq data with XClone von Huang, Rongting, Huang, Xianjie, Tong, Yin, Yan, Helen Y. N., Leung, Suet Yi, Stegle, Oliver, Huang, Yuanhua

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CRISPR/Cas9‐mediated somatic correction of a novel coagulator factor IX gene mutation ameliorates hemophilia in mouse von Guan, Yuting, Ma, Yanlin, Li, Qi, Sun, Zhenliang, Ma, Lie, Wu, Lijuan, Wang, Liren, Zeng, Li, Shao, Yanjiao, Chen, Yuting, Ma, Ning, Lu, Wenqing, Hu, Kewen, Han, Honghui, Yu, Yanhong, Huang, Yuanhua, Liu, Mingyao, Li, Dali

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Application of next-generation sequencing in thalassemia screening: A systematic review and meta-analysis von Fang, Xingyi, Gong, Yi, Ma, Yanlin, Huang, Yuanhua

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Time-series single-cell transcriptomic profiling of luteal-phase endometrium uncovers dynamic characteristics and its dysregulation in recurrent implantation failures von Cao, Dandan, Liu, Yijun, Cheng, Yanfei, Wang, Jue, Zhang, Bolun, Zhai, Yanhui, Zhu, Kongfu, Liu, Ye, Shang, Ye, Xiao, Xiao, Chang, Yi, Lee, Yin Lau, Yeung, William Shu Biu, Huang, Yuanhua, Yao, Yuanqing

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StaVia: spatially and temporally aware cartography with higher-order random walks for cell atlases von Stassen, Shobana V, Kobashi, Minato, Lam, Edmund Y, Huang, Yuanhua, Ho, Joshua W K, Tsia, Kevin K

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Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling von Barrass, J David, Reid, Jane E A, Huang, Yuanhua, Hector, Ralph D, Sanguinetti, Guido, Beggs, Jean D, Granneman, Sander

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Representation learning of RNA velocity reveals robust cell transitions von Qiao, Chen, Huang, Yuanhua

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Genetic correction of concurrent α- and β-thalassemia patient-derived pluripotent stem cells by the CRISPR-Cas9 technology von Li, Lingli, Yi, Hongyan, Liu, Zheng, Long, Ping, Pan, Tao, Huang, Yuanhua, Li, Yongsheng, Li, Qi, Ma, Yanlin

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Live birth sex ratio after in vitro fertilization and embryo transfer in China--an analysis of 121,247 babies from 18 centers von Bu, Zhiqin, Chen, Zi-Jiang, Huang, Guoning, Zhang, Hanwang, Wu, Qiongfang, Ma, Yanping, Shi, Juanzi, Xu, Yanwen, Zhang, Songying, Zhang, Cuilian, Zhao, Xiaoming, Zhang, Bo, Huang, Yuanhua, Sun, Zhengyi, Kang, Yuefan, Wu, Riran, Wu, Xueqing, Sun, Haixiang, Sun, Yingpu

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