The HDOCK server for integrated protein–protein docking von Yan, Yumeng, Tao, Huanyu, He, Jiahua, Huang, Sheng-You

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Molecular Mechanism of Evolution and Human Infection with SARS-CoV-2 von He, Jiahua, Tao, Huanyu, Yan, Yumeng, Huang, Sheng-You, Xiao, Yi

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Addressing recent docking challenges: A hybrid strategy to integrate template‐based and free protein‐protein docking von Yan, Yumeng, Wen, Zeyu, Wang, Xinxiang, Huang, Sheng‐You

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Pushing the accuracy limit of shape complementarity for protein-protein docking von Yan, Yumeng, Huang, Sheng-You

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An iterative knowledge-based scoring function for protein-protein recognition von Huang, Sheng-You, Zou, Xiaoqin

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Advances and challenges in protein-ligand docking von Huang, Sheng-You, Zou, Xiaoqin

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Ensemble docking of multiple protein structures: Considering protein structural variations in molecular docking von Huang, Sheng-You, Zou, Xiaoqin

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Improvement of cryo-EM maps by simultaneous local and non-local deep learning von He, Jiahua, Li, Tao, Huang, Sheng-You

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A knowledge-based scoring function for protein-RNA interactions derived from a statistical mechanics-based iterative method von Huang, Sheng-You, Zou, Xiaoqin

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HDOCK update for modeling protein‐RNA/DNA complex structures von Li, Hao, Huang, Eddie, Zhang, Yi, Huang, Sheng‐You, Xiao, Yi

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Model building of protein complexes from intermediate-resolution cryo-EM maps with deep learning-guided automatic assembly von He, Jiahua, Lin, Peicong, Chen, Ji, Cao, Hong, Huang, Sheng-You

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DeepHomo2.0: improved protein–protein contact prediction of homodimers by transformer-enhanced deep learning von Lin, Peicong, Yan, Yumeng, Huang, Sheng-You

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HCovDock: an efficient docking method for modeling covalent protein–ligand interactions von Wu, Qilong, Huang, Sheng-You

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Deep transfer learning for inter-chain contact predictions of transmembrane protein complexes von Lin, Peicong, Yan, Yumeng, Tao, Huanyu, Huang, Sheng-You

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An iterative knowledge-based scoring function to predict protein-ligand interactions: I. Derivation of interaction potentials von Huang, Sheng-You, Zou, Xiaoqin

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Challenges and opportunities of automated protein‐protein docking: HDOCK server vs human predictions in CAPRI Rounds 38‐46 von Yan, Yumeng, He, Jiahua, Feng, Yuyu, Lin, Peicong, Tao, Huanyu, Huang, Sheng‐You

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Efficient conformational ensemble generation of protein-bound peptides von Yan, Yumeng, Zhang, Di, Huang, Sheng-You

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A nonredundant structure dataset for benchmarking protein-RNA computational docking von Huang, Sheng-You, Zou, Xiaoqin

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Statistical mechanics-based method to extract atomic distance-dependent potentials from protein structures von Huang, Sheng-You, Zou, Xiaoqin

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PepBDB: a comprehensive structural database of biological peptide–protein interactions von Wen, Zeyu, He, Jiahua, Tao, Huanyu, Huang, Sheng-You

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