Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation von Ramsey, Jolene, Rasche, Helena, Maughmer, Cory, Criscione, Anthony, Mijalis, Eleni, Liu, Mei, Hu, James C, Young, Ry, Gill, Jason J

Volltext

ECO, the Evidence & Conclusion Ontology: community standard for evidence information von Giglio, Michelle, Tauber, Rebecca, Nadendla, Suvarna, Munro, James, Olley, Dustin, Ball, Shoshannah, Mitraka, Elvira, Schriml, Lynn M, Gaudet, Pascale, Hobbs, Elizabeth T, Erill, Ivan, Siegele, Deborah A, Hu, James C, Mungall, Chris, Chibucos, Marcus C

Volltext

Baseline Sequencing Surveillance of Public Clinical Testing, Hospitals, and Community Wastewater Reveals Rapid Emergence of SARS-CoV-2 Omicron Variant of Concern in Arizona, USA von Smith, Matthew F, Holland, Steven C, Lee, Mihyun B, Hu, James C, Pham, Nghia C, Sullins, Regan A, Holland, LaRinda A, Mu, Tianchen, Thomas, Alexis W, Fitch, Remington, Driver, Erin M, Halden, Rolf U, Villegas-Gold, Michelle, Sanders, Sheri, Krauss, Jennifer L, Nordstrom, Lora, Mulrow, Mary, White, Michael, Murugan, Vel, Lim, Efrem S

Volltext

Specificity of the E. coli LysR-type transcriptional regulators von Knapp, Gwendowlyn S, Hu, James C

Volltext

Digital PCR Discriminates between SARS-CoV-2 Omicron Variants and Immune Escape Mutations von Holland, Steven C, Holland, LaRinda A, Smith, Matthew F, Lee, Mihyun B, Hu, James C, Lim, Efrem S

Volltext

Insights from the reanalysis of high-throughput chemical genomics data for Escherichia coli K-12 von Wu, Peter I-Fan, Ross, Curtis, Siegele, Deborah A, Hu, James C

Volltext

Phenotypic Associations Among Cell Cycle Genes in Saccharomyces cerevisiae von Bermudez, Rosa M, Wu, Peter I-Fan, Callerame, Deanna, Hammer, Staci, Hu, James C, Polymenis, Michael

Volltext

The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology von Rajagopala, Seesandra V, Yamamoto, Natsuko, Zweifel, Adrienne E, Nakamichi, Tomoko, Huang, Hsi-Kuang, Mendez-Rios, Jorge David, Franca-Koh, Jonathan, Boorgula, Meher Preethi, Fujita, Kazutoshi, Suzuki, Ken-ichirou, Hu, James C, Wanner, Barry L, Mori, Hirotada, Uetz, Peter

Volltext

Phenotype annotation with the ontology of microbial phenotypes (OMP) von Siegele, Deborah A, LaBonte, Sandra A, Wu, Peter I-Fan, Chibucos, Marcus C, Nandendla, Suvarna, Giglio, Michelle G, Hu, James C

Volltext

Microbial virus genome annotation—Mustering the troops to fight the sequence onslaught von Rodney Brister, J, Le Mercier, Phillippe, Hu, James C

Volltext

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools von Hu, James C, Sherlock, Gavin, Siegele, Deborah A, Aleksander, Suzanne A, Ball, Catherine A, Demeter, Janos, Gouni, Sushanth, Holland, Timothy A, Karp, Peter D, Lewis, John E, Liles, Nathan M, McIntosh, Brenley K, Mi, Huaiyu, Muruganujan, Anushya, Wymore, Farrell, Thomas, Paul D, Altman, Tomer

Volltext

Gene Expression from Plasmids Containing the araBAD Promoter at Subsaturating Inducer Concentrations Represents Mixed Populations von Siegele, Deborah A., Hu, James C.

Volltext

Bacteria-to-Human Protein Networks Reveal Origins of Endogenous DNA Damage von Xia, Jun, Chiu, Li-Ya, Nehring, Ralf B., Bravo Núñez, María Angélica, Mei, Qian, Perez, Mercedes, Zhai, Yin, Fitzgerald, Devon M., Pribis, John P., Wang, Yumeng, Hu, Chenyue W., Powell, Reid T., LaBonte, Sandra A., Jalali, Ali, Matadamas Guzmán, Meztli L., Lentzsch, Alfred M., Szafran, Adam T., Joshi, Mohan C., Richters, Megan, Gibson, Janet L., Frisch, Ryan L., Hastings, P.J., Bates, David, Queitsch, Christine, Hilsenbeck, Susan G., Coarfa, Cristian, Hu, James C., Siegele, Deborah A., Scott, Kenneth L., Liang, Han, Mancini, Michael A., Herman, Christophe, Miller, Kyle M., Rosenberg, Susan M.

Volltext

Wastewater and clinical surveillance of respiratory viral pathogens on a university campus von Holland, Steven C., Smith, Matthew F., Holland, LaRinda A., Maqsood, Rabia, Hu, James C., Murugan, Vel, Driver, Erin M., Halden, Rolf U., Lim, Efrem S.

Volltext

Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs von Shiver, Anthony L., Osadnik, Hendrik, Peters, Jason M., Mooney, Rachel A., Wu, Peter I., Henry, Kemardo K., Braberg, Hannes, Krogan, Nevan J., Hu, James C., Landick, Robert, Huang, Kerwyn Casey, Gross, Carol A.

Volltext

What we can learn about Escherichia coli through application of Gene Ontology von Hu, James C, Karp, Peter D, Keseler, Ingrid M, Krummenacker, Markus, Siegele, Deborah A

Volltext

An ontology for microbial phenotypes von Chibucos, Marcus C, Zweifel, Adrienne E, Herrera, Jonathan C, Meza, William, Eslamfam, Shabnam, Uetz, Peter, Siegele, Deborah A, Hu, James C, Giglio, Michelle G

Volltext

GONUTS: the Gene Ontology Normal Usage Tracking System von Renfro, Daniel P., McIntosh, Brenley K., Venkatraman, Anand, Siegele, Deborah A., Hu, James C.

Volltext

An ultra-dense library resource for rapid deconvolution of mutations that cause phenotypes in Escherichia coli von Nehring, Ralf B, Gu, Franklin, Lin, Hsin-Yu, Gibson, Janet L, Blythe, Martin J, Wilson, Ray, Bravo Núñez, María Angélica, Hastings, P J, Louis, Edward J, Frisch, Ryan L, Hu, James C, Rosenberg, Susan M

Volltext

Buried Asparagines Determine the Dimerization Specificities of Leucine Zipper Mutants von Zeng, Xiangang, Herndon, Aaron M., Hu, James C.

Volltext