OntoTrek: 3D visualization of application ontology class hierarchies von Dooley, Damion, Nguyen, Matthew H, Hsiao, William W L

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Detecting genomic islands using bioinformatics approaches von Brinkman, Fiona S. L, Langille, Morgan G. I, Hsiao, William W. L

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FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration von Dooley, Damion M., Griffiths, Emma J., Gosal, Gurinder S., Buttigieg, Pier L., Hoehndorf, Robert, Lange, Matthew C., Schriml, Lynn M., Brinkman, Fiona S. L., Hsiao, William W. L.

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Evaluation of genomic island predictors using a comparative genomics approach von Langille, Morgan G I, Hsiao, William W L, Brinkman, Fiona S L

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The association of virulence factors with genomic islands von Ho Sui, Shannan J, Fedynak, Amber, Hsiao, William W L, Langille, Morgan G I, Brinkman, Fiona S L

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Microbial transformation from normal oral microbiota to acute endodontic infections von Hsiao, William Wl, Li, Kevin L, Liu, Zhenqiu, Jones, Cheron, Fraser-Liggett, Claire M, Fouad, Ashraf F

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Infection control in the new age of genomic epidemiology von Tang, Patrick, MD, PhD, Croxen, Matthew A., PhD, Hasan, Mohammad R., PhD, Hsiao, William W.L., PhD, Hoang, Linda M., MD

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Addressing Privacy Concerns in Sharing Viral Sequences and Minimum Contextual Data in a Public Repository During the COVID-19 Pandemic von Song, Lingqiao, Liu, Hanshi, Brinkman, Fiona S L, Gill, Erin, Griffiths, Emma J, Hsiao, William W L, Savić-Kallesøe, Sarah, Moreira, Sandrine, Van Domselaar, Gary, Zawati, Ma'n H, Joly, Yann

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Year-Long Metagenomic Study of River Microbiomes Across Land Use and Water Quality von Van Rossum, Thea, Peabody, Michael A, Uyaguari-Diaz, Miguel I, Cronin, Kirby I, Chan, Michael, Slobodan, Jared R, Nesbitt, Matthew J, Suttle, Curtis A, Hsiao, William W L, Tang, Patrick K C, Prystajecky, Natalie A, Brinkman, Fiona S L

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Evidence of a large novel gene pool associated with prokaryotic genomic islands von Hsiao, William W L, Ung, Korine, Aeschliman, Dana, Bryan, Jenny, Finlay, B Brett, Brinkman, Fiona S L

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Giardia spp. Are Commonly Found in Mixed Assemblages in Surface Water, as Revealed by Molecular and Whole-Genome Characterization von Prystajecky, Natalie, Tsui, Clement K-M, Hsiao, William W L, Uyaguari-Diaz, Miguel I, Ho, Jordan, Tang, Patrick, Isaac-Renton, Judith

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Context Is Everything: Harmonization of Critical Food Microbiology Descriptors and Metadata for Improved Food Safety and Surveillance von Griffiths, Emma, Dooley, Damion, Graham, Morag, Van Domselaar, Gary, Brinkman, Fiona S L, Hsiao, William W L

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Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity von Sahl, Jason W, Johnson, J Kristie, Harris, Anthony D, Phillippy, Adam M, Hsiao, William W, Thom, Kerri A, Rasko, David A

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CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database von Alcock, Brian P, Raphenya, Amogelang R, Lau, Tammy T Y, Tsang, Kara K, Bouchard, Mégane, Edalatmand, Arman, Huynh, William, Nguyen, Anna-Lisa V, Cheng, Annie A, Liu, Sihan, Min, Sally Y, Miroshnichenko, Anatoly, Tran, Hiu-Ki, Werfalli, Rafik E, Nasir, Jalees A, Oloni, Martins, Speicher, David J, Florescu, Alexandra, Singh, Bhavya, Faltyn, Mateusz, Hernandez-Koutoucheva, Anastasia, Sharma, Arjun N, Bordeleau, Emily, Pawlowski, Andrew C, Zubyk, Haley L, Dooley, Damion, Griffiths, Emma, Maguire, Finlay, Winsor, Geoff L, Beiko, Robert G, Brinkman, Fiona S L, Hsiao, William W L, Domselaar, Gary V, McArthur, Andrew G

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Canadians’ opinions towards COVID-19 data-sharing: a national cross-sectional survey von Savic Kallesoe, Sarah A, Rabbani, Tian, Gill, Erin E, Brinkman, Fiona, Griffiths, Emma J, Zawati, Ma'n, Liu, Hanshi, Palmour, Nicole, Joly, Yann, Hsiao, William W L

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The Complete Genome of Rhodococcus sp. RHA1 Provides Insights into a Catabolic Powerhouse von McLeod, Michael P., Warren, René L., Hsiao, William W. L., Araki, Naoto, Myhre, Matthew, Fernandes, Clinton, Miyazawa, Daisuke, Wong, Wendy, Lillquist, Anita L., Wang, Dennis, Dosanjh, Manisha, Hara, Hirofumi, Petrescu, Anca, Morin, Ryan D., Yang, George, Stott, Jeff M., Schein, Jacqueline E., Shin, Heesun, Smailus, Duane, Siddiqui, Asim S., Marra, Marco A., Jones, Steven J. M., Holt, Robert, Brinkman, Fiona S. L., Miyauchi, Keisuke, Fukuda, Masao, Davies, Julian E., Mohn, William W., Eltis, Lindsay D.

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Sequence database versioning for command line and Galaxy bioinformatics servers von Dooley, Damion M, Petkau, Aaron J, Van Domselaar, Gary, Hsiao, William W L

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CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database von Alcock, Brian P, Huynh, William, Chalil, Romeo, Smith, Keaton W, Raphenya, Amogelang R, Wlodarski, Mateusz A, Edalatmand, Arman, Petkau, Aaron, Syed, Sohaib A, Tsang, Kara K, Baker, Sheridan J C, Dave, Mugdha, McCarthy, Madeline C, Mukiri, Karyn M, Nasir, Jalees A, Golbon, Bahar, Imtiaz, Hamna, Jiang, Xingjian, Kaur, Komal, Kwong, Megan, Liang, Zi Cheng, Niu, Keyu C, Shan, Prabakar, Yang, Jasmine Y J, Gray, Kristen L, Hoad, Gemma R, Jia, Baofeng, Bhando, Timsy, Carfrae, Lindsey A, Farha, Maya A, French, Shawn, Gordzevich, Rodion, Rachwalski, Kenneth, Tu, Megan M, Bordeleau, Emily, Dooley, Damion, Griffiths, Emma, Zubyk, Haley L, Brown, Eric D, Maguire, Finlay, Beiko, Robert G, Hsiao, William W L, Brinkman, Fiona S L, Van Domselaar, Gary, McArthur, Andrew G

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Patients with Acinetobacter baumannii bloodstream infections are colonized in the gastrointestinal tract with identical strains von Thom, Kerri A., MD, MS, Hsiao, William W.L., PhD, Harris, Anthony D., MD, MPH, Stine, O. Colin, PhD, Rasko, David A., PhD, Johnson, J. Kristie, PhD

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MicrobeDB: a locally maintainable database of microbial genomic sequences von LANGILLE, Morgan G. I, LAIRD, Matthew R, HSIAO, William W. L, CHIU, Terry A, EISEN, Jonathan A, BRINKMAN, Fiona S. L

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