WormBase ParaSite - a comprehensive resource for helminth genomics von Howe, Kevin L, Bolt, Bruce J, Shafie, Myriam, Kersey, Paul, Berriman, Matthew

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WormBase: a modern Model Organism Information Resource von Harris, Todd W, Arnaboldi, Valerio, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Cho, Jaehyoung, Davis, Paul, Gao, Sibyl, Grove, Christian A, Kishore, Ranjana, Lee, Raymond Y N, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Rodgers, Faye H, Russell, Matthew, Schindelman, Gary, Auken, Kimberly V, Wang, Qinghua, Williams, Gary, Wright, Adam J, Yook, Karen, Howe, Kevin L, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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WormBase 2016: expanding to enable helminth genomic research von Howe, Kevin L, Bolt, Bruce J, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Davis, Paul, Done, James, Down, Thomas, Gao, Sibyl, Grove, Christian, Harris, Todd W, Kishore, Ranjana, Lee, Raymond, Lomax, Jane, Li, Yuling, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Schindelman, Gary, Stanley, Eleanor, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Daniel, Wang, Xiaodong, Williams, Gary, Wright, Adam, Yook, Karen, Berriman, Matthew, Kersey, Paul, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm von Doyle, Stephen R., Tracey, Alan, Laing, Roz, Holroyd, Nancy, Bartley, David, Bazant, Wojtek, Beasley, Helen, Beech, Robin, Britton, Collette, Brooks, Karen, Chaudhry, Umer, Maitland, Kirsty, Martinelli, Axel, Noonan, Jennifer D., Paulini, Michael, Quail, Michael A., Redman, Elizabeth, Rodgers, Faye H., Sallé, Guillaume, Shabbir, Muhammad Zubair, Sankaranarayanan, Geetha, Wit, Janneke, Howe, Kevin L., Sargison, Neil, Devaney, Eileen, Berriman, Matthew, Gilleard, John S., Cotton, James A.

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A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis von Down, Thomas A, Rakyan, Vardhman K, Turner, Daniel J, Flicek, Paul, Li, Heng, Kulesha, Eugene, Gräf, Stefan, Johnson, Nathan, Herrero, Javier, Tomazou, Eleni M, Thorne, Natalie P, Bäckdahl, Liselotte, Herberth, Marlis, Howe, Kevin L, Jackson, David K, Miretti, Marcos M, Marioni, John C, Birney, Ewan, Hubbard, Tim J P, Durbin, Richard, Tavaré, Simon, Beck, Stephan

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Piwi and piRNAs Act Upstream of an Endogenous siRNA Pathway to Suppress Tc3 Transposon Mobility in the Caenorhabditis elegans Germline von Das, Partha P., Bagijn, Marloes P., Goldstein, Leonard D., Woolford, Julie R., Lehrbach, Nicolas J., Sapetschnig, Alexandra, Buhecha, Heeran R., Gilchrist, Michael J., Howe, Kevin L., Stark, Rory, Matthews, Nik, Berezikov, Eugene, Ketting, René F., Tavaré, Simon, Miska, Eric A.

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The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data von De Silva, Nishadi H, Bhai, Jyothish, Chakiachvili, Marc, Contreras-Moreira, Bruno, Cummins, Carla, Frankish, Adam, Gall, Astrid, Genez, Thiago, Howe, Kevin L, Hunt, Sarah E, Martin, Fergal J, Moore, Benjamin, Ogeh, Denye, Parker, Anne, Parton, Andrew, Ruffier, Magali, Sakthivel, Manoj Pandian, Sheppard, Dan, Tate, John, Thormann, Anja, Thybert, David, Trevanion, Stephen J, Winterbottom, Andrea, Zerbino, Daniel R, Finn, Robert D, Flicek, Paul, Yates, Andrew D

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An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs) von Rakyan, Vardhman K, Down, Thomas A, Thorne, Natalie P, Flicek, Paul, Kulesha, Eugene, Gräf, Stefan, Tomazou, Eleni M, Bäckdahl, Liselotte, Johnson, Nathan, Herberth, Marlis, Howe, Kevin L, Jackson, David K, Miretti, Marcos M, Fiegler, Heike, Marioni, John C, Birney, Ewan, Hubbard, Tim J P, Carter, Nigel P, Tavaré, Simon, Beck, Stephan

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Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes von Grove, Christian, Cain, Scott, Chen, Wen J., Davis, Paul, Harris, Todd, Howe, Kevin L., Kishore, Ranjana, Lee, Raymond, Paulini, Michael, Raciti, Daniela, Tuli, Mary Ann, Van Auken, Kimberly, Williams, Gary

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Ensembl Genomes 2016: more genomes, more complexity von Kersey, Paul Julian, Allen, James E., Armean, Irina, Boddu, Sanjay, Bolt, Bruce J., Carvalho-Silva, Denise, Christensen, Mikkel, Davis, Paul, Falin, Lee J., Grabmueller, Christoph, Humphrey, Jay, Kerhornou, Arnaud, Khobova, Julia, Aranganathan, Naveen K., Langridge, Nicholas, Lowy, Ernesto, McDowall, Mark D., Maheswari, Uma, Nuhn, Michael, Ong, Chuang Kee, Overduin, Bert, Paulini, Michael, Pedro, Helder, Perry, Emily, Spudich, Giulietta, Tapanari, Electra, Walts, Brandon, Williams, Gareth, Tello–Ruiz, Marcela, Stein, Joshua, Wei, Sharon, Ware, Doreen, Bolser, Daniel M., Howe, Kevin L., Kulesha, Eugene, Lawson, Daniel, Maslen, Gareth, Staines, Daniel M.

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DNA methylation profiling of the human major histocompatibility complex: a pilot study for the human epigenome project von Rakyan, Vardhman K, Hildmann, Thomas, Novik, Karen L, Lewin, Jörn, Tost, Jörg, Cox, Antony V, Andrews, T Dan, Howe, Kevin L, Otto, Thomas, Olek, Alexander, Fischer, Judith, Gut, Ivo G, Berlin, Kurt, Beck, Stephan

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Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes von Schulte, Ina, Batty, Elizabeth M, Pole, Jessica C M, Blood, Katherine A, Mo, Steven, Cooke, Susanna L, Ng, Charlotte, Howe, Kevin L, Chin, Suet-Feung, Brenton, James D, Caldas, Carlos, Howarth, Karen D, Edwards, Paul A W

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Ensembl Genomes 2022: an expanding genome resource for non-vertebrates von Yates, Andrew D, Allen, James, Amode, Ridwan M, Azov, Andrey G, Barba, Matthieu, Becerra, Andrés, Bhai, Jyothish, Campbell, Lahcen I, Carbajo Martinez, Manuel, Chakiachvili, Marc, Chougule, Kapeel, Christensen, Mikkel, Contreras-Moreira, Bruno, Cuzick, Alayne, Da Rin Fioretto, Luca, Davis, Paul, De Silva, Nishadi H, Diamantakis, Stavros, Dyer, Sarah, Elser, Justin, Filippi, Carla V, Gall, Astrid, Grigoriadis, Dionysios, Guijarro-Clarke, Cristina, Gupta, Parul, Hammond-Kosack, Kim E, Howe, Kevin L, Jaiswal, Pankaj, Kaikala, Vinay, Kumar, Vivek, Kumari, Sunita, Langridge, Nick, Le, Tuan, Luypaert, Manuel, Maslen, Gareth L, Maurel, Thomas, Moore, Benjamin, Muffato, Matthieu, Mushtaq, Aleena, Naamati, Guy, Naithani, Sushma, Olson, Andrew, Parker, Anne, Paulini, Michael, Pedro, Helder, Perry, Emily, Preece, Justin, Quinton-Tulloch, Mark, Rodgers, Faye, Rosello, Marc, Ruffier, Magali, Seager, James, Sitnik, Vasily, Szpak, Michal, Tate, John, Tello-Ruiz, Marcela K, Trevanion, Stephen J, Urban, Martin, Ware, Doreen, Wei, Sharon, Williams, Gary, Winterbottom, Andrea, Zarowiecki, Magdalena, Finn, Robert D, Flicek, Paul

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WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans von Davis, Paul, Zarowiecki, Magdalena, Arnaboldi, Valerio, Becerra, Andrés, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Cho, Jaehyoung, da Veiga Beltrame, Eduardo, Diamantakis, Stavros, Gao, Sibyl, Grigoriadis, Dionysis, Grove, Christian A, Harris, Todd W, Kishore, Ranjana, Le, Tuan, Lee, Raymond Y N, Luypaert, Manuel, Müller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Quinton-Tulloch, Mark, Raciti, Daniela, Rodgers, Faye H, Russell, Matthew, Schindelman, Gary, Singh, Archana, Stickland, Tim, Van Auken, Kimberly, Wang, Qinghua, Williams, Gary, Wright, Adam J, Yook, Karen, Berriman, Matt, Howe, Kevin L, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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Ensembl Genomes 2020—enabling non-vertebrate genomic research von Howe, Kevin L, Contreras-Moreira, Bruno, De Silva, Nishadi, Maslen, Gareth, Akanni, Wasiu, Allen, James, Alvarez-Jarreta, Jorge, Barba, Matthieu, Bolser, Dan M, Cambell, Lahcen, Carbajo, Manuel, Chakiachvili, Marc, Christensen, Mikkel, Cummins, Carla, Cuzick, Alayne, Davis, Paul, Fexova, Silvie, Gall, Astrid, George, Nancy, Gil, Laurent, Gupta, Parul, Hammond-Kosack, Kim E, Haskell, Erin, Hunt, Sarah E, Jaiswal, Pankaj, Janacek, Sophie H, Kersey, Paul J, Langridge, Nick, Maheswari, Uma, Maurel, Thomas, McDowall, Mark D, Moore, Ben, Muffato, Matthieu, Naamati, Guy, Naithani, Sushma, Olson, Andrew, Papatheodorou, Irene, Patricio, Mateus, Paulini, Michael, Pedro, Helder, Perry, Emily, Preece, Justin, Rosello, Marc, Russell, Matthew, Sitnik, Vasily, Staines, Daniel M, Stein, Joshua, Tello-Ruiz, Marcela K, Trevanion, Stephen J, Urban, Martin, Wei, Sharon, Ware, Doreen, Williams, Gary, Yates, Andrew D, Flicek, Paul

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Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species von Kersey, Paul Julian, Allen, James E, Allot, Alexis, Barba, Matthieu, Boddu, Sanjay, Bolt, Bruce J, Carvalho-Silva, Denise, Christensen, Mikkel, Davis, Paul, Grabmueller, Christoph, Kumar, Navin, Liu, Zicheng, Maurel, Thomas, Moore, Ben, McDowall, Mark D, Maheswari, Uma, Naamati, Guy, Newman, Victoria, Ong, Chuang Kee, Paulini, Michael, Pedro, Helder, Perry, Emily, Russell, Matthew, Sparrow, Helen, Tapanari, Electra, Taylor, Kieron, Vullo, Alessandro, Williams, Gareth, Zadissia, Amonida, Olson, Andrew, Stein, Joshua, Wei, Sharon, Tello-Ruiz, Marcela, Ware, Doreen, Luciani, Aurelien, Potter, Simon, Finn, Robert D, Urban, Martin, Hammond-Kosack, Kim E, Bolser, Dan M, De Silva, Nishadi, Howe, Kevin L, Langridge, Nicholas, Maslen, Gareth, Staines, Daniel Michael, Yates, Andrew

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Ensembl Genomes 2016: more genomes, more complexity von Kersey, Paul Julian, Allen, James E, Armean, Irina, Boddu, Sanjay, Bolt, Bruce J, Carvalho-Silva, Denise, Christensen, Mikkel, Davis, Paul, Falin, Lee J, Grabmueller, Christoph, Humphrey, Jay, Kerhornou, Arnaud, Khobova, Julia, Aranganathan, Naveen K, Langridge, Nicholas, Lowy, Ernesto, McDowall, Mark D, Maheswari, Uma, Nuhn, Michael, Ong, Chuang Kee, Overduin, Bert, Paulini, Michael, Pedro, Helder, Perry, Emily, Spudich, Giulietta, Tapanari, Electra, Walts, Brandon, Williams, Gareth, Tello-Ruiz, Marcela, Stein, Joshua, Wei, Sharon, Ware, Doreen, Bolser, Daniel M, Howe, Kevin L, Kulesha, Eugene, Lawson, Daniel, Maslen, Gareth, Staines, Daniel M

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WormBase 2017: molting into a new stage von Lee, Raymond Y N, Howe, Kevin L, Harris, Todd W, Arnaboldi, Valerio, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Davis, Paul, Gao, Sibyl, Grove, Christian, Kishore, Ranjana, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Rodgers, Faye, Russell, Matt, Schindelman, Gary, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Qinghua, Williams, Gary, Wright, Adam, Yook, Karen, Berriman, Matthew, Kersey, Paul, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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A new reference genome sequence for Caenorhabditis elegans? von Howe, Kevin L.

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RNAcentral: a comprehensive database of non-coding RNA sequences von Petrov, Anton I, Kay, Simon J E, Kalvari, Ioanna, Howe, Kevin L, Gray, Kristian A, Bruford, Elspeth A, Kersey, Paul J, Cochrane, Guy, Finn, Robert D, Bateman, Alex, Kozomara, Ana, Griffiths-Jones, Sam, Frankish, Adam, Zwieb, Christian W, Lau, Britney Y, Williams, Kelly P, Chan, Patricia P, Lowe, Todd M, Cannone, Jamie J, Gutell, Robin, Machnicka, Magdalena A, Bujnicki, Janusz M, Yoshihama, Maki, Kenmochi, Naoya, Chai, Benli, Cole, James R, Szymanski, Maciej, Karlowski, Wojciech M, Wood, Valerie, Huala, Eva, Berardini, Tanya Z, Zhao, Yi, Chen, Runsheng, Zhu, Weimin, Paraskevopoulou, Maria D, Vlachos, Ioannis S, Hatzigeorgiou, Artemis G, Ma, Lina, Zhang, Zhang, Puetz, Joern, Stadler, Peter F, McDonald, Daniel, Basu, Siddhartha, Fey, Petra, Engel, Stacia R, Cherry, J Michael, Volders, Pieter-Jan, Mestdagh, Pieter, Wower, Jacek, Clark, Michael B, Quek, Xiu Cheng, Dinger, Marcel E

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