Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons von Wetmore, Kelly M, Price, Morgan N, Waters, Robert J, Lamson, Jacob S, He, Jennifer, Hoover, Cindi A, Blow, Matthew J, Bristow, James, Butland, Gareth, Arkin, Adam P, Deutschbauer, Adam

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Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments von Librado, Pablo, Sarkissian, Clio Der, Ermini, Luca, Schubert, Mikkel, Jónsson, Hákon, Albrechtsen, Anders, Fumagalli, Matteo, Yang, Melinda A., Gamba, Cristina, Seguin-Orlando, Andaine, Mortensen, Cecilie D., Petersen, Bent, Hoover, Cindi A., Lorente-Galdos, Belen, Nedoluzhko, Artem, Boulygina, Eugenia, Tsygankova, Svetlana, Neuditschko, Markus, Jagannathan, Vidhya, Thèves, Catherine, Alfarhan, Ahmed H., Alquraishi, Saleh A., Al-Rasheid, Khaled A. S., Sicheritz-Ponten, Thomas, Popov, Ruslan, Grigoriev, Semyon, Alekseev, Anatoly N., Rubin, Edward M., McCue, Molly, Rieder, Stefan, Leeb, Tosso, Tikhonov, Alexei, Crubézy, Eric, Slatkin, Montgomery, Marques-Bonet, Tomas, Nielsen, Rasmus, Willerslev, Eske, Kantanen, Juha, Prokhortchouk, Egor, Orlando, Ludovic

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Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome von Pedersen, Jakob Skou, Valen, Eivind, Velazquez, Amhed M Vargas, Parker, Brian J, Rasmussen, Morten, Lindgreen, Stinus, Lilje, Berit, Tobin, Desmond J, Kelly, Theresa K, Vang, Søren, Andersson, Robin, Jones, Peter A, Hoover, Cindi A, Tikhonov, Alexei, Prokhortchouk, Egor, Rubin, Edward M, Sandelin, Albin, Gilbert, M Thomas P, Krogh, Anders, Willerslev, Eske, Orlando, Ludovic

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Transposon Mutagenesis Paired with Deep Sequencing of Caulobacter crescentus under Uranium Stress Reveals Genes Essential for Detoxification and Stress Tolerance von Yung, Mimi C, Park, Dan M, Overton, K Wesley, Blow, Matthew J, Hoover, Cindi A, Smit, John, Murray, Sean R, Ricci, Dante P, Christen, Beat, Bowman, Grant R, Jiao, Yongqin

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A scalable, fully automated process for construction of sequence-ready barcoded libraries for 454 von Lennon, Niall J, Lintner, Robert E, Anderson, Scott, Alvarez, Pablo, Barry, Andrew, Brockman, William, Daza, Riza, Erlich, Rachel L, Giannoukos, Georgia, Green, Lisa, Hollinger, Andrew, Hoover, Cindi A, Jaffe, David B, Juhn, Frank, McCarthy, Danielle, Perrin, Danielle, Ponchner, Karen, Powers, Taryn L, Rizzolo, Kamran, Robbins, Dana, Ryan, Elizabeth, Russ, Carsten, Sparrow, Todd, Stalker, John, Steelman, Scott, Weiand, Michael, Zimmer, Andrew, Henn, Matthew R, Nusbaum, Chad, Nicol, Robert

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Functional Approach to Transcriptome Profiling: Linking Gene Expression Patterns to Metabolites that Matter von Hoover, Cindi A, Slattery, Marc, Marsh, Adam G

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Profiling Transcriptome Complexity and Secondary Metabolite Synthesis in a Benthic Soft Coral, Sinularia polydactyla von Hoover, Cindi A, Slattery, Marc, Marsh, Adam G

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Fundulus as the premier teleost model in environmental biology: Opportunities for new insights using genomics von Burnett, Karen G., Bain, Lisa J., Baldwin, William S., Callard, Gloria V., Cohen, Sarah, Di Giulio, Richard T., Evans, David H., Gómez-Chiarri, Marta, Hahn, Mark E., Hoover, Cindi A., Karchner, Sibel I., Katoh, Fumi, MacLatchy, Deborah L., Marshall, William S., Meyer, Joel N., Nacci, Diane E., Oleksiak, Marjorie F., Rees, Bernard B., Singer, Thomas D., Stegeman, John J., Towle, David W., Van Veld, Peter A., Vogelbein, Wolfgang K., Whitehead, Andrew, Winn, Richard N., Crawford, Douglas L.

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Hybrid Vigor in a Tropical Pacific Soft-Coral Community von Slattery, Marc, Kamel, Haidy N, Ankisetty, Sridevi, Gochfeld, Deborah J, Hoover, Cindi A, Thacker, Robert W

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Transcriptome and Metabolite Responses to Predation in a South Pacific Soft Coral von Hoover, Cindi A., Slattery, Marc, Targett, Nancy M., Marsh, Adam G.

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Prehistoric genomes reveal the genetic foundation and cost of horse domestication von Schubert, Mikkel, Jónsson, Hákon, Chang, Dan, Sarkissian, Clio Der, Ermini, Luca, Ginolhac, Aurélien, Albrechtsen, Anders, Dupanloup, Isabelle, Foucal, Adrien, Petersen, Bent, Fumagalli, Matteo, Raghavan, Maanasa, Seguin-Orlando, Andaine, Korneliussen, Thorfinn S, Velazquez, Amhed MV, Stenderup, Jesper, Hoover, Cindi A, Rubin, Carl-Johan, Alfarhan, Ahmed H, Alquraishi, Saleh A, Al-Rasheid, Khaled AS, MacHugh, David E, Kalbfleisch, Ted, MacLeod, James N, Rubin, Edward M, Sicheritz-Ponten, Thomas, Andersson, Leif, Hofreiter, Michael, Marques-Bonet, Tomas, Gilbert, M Thomas P, Nielsen, Rasmus, Excoffier, Laurent, Willerslev, Eske, Shapiro, Beth, Orlando, Ludovic

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GEOGRAPHIC VARIATION IN NUCLEAR GENES OF THE EASTERN OYSTER, CRASSOSTREA VIRGINICA GMELIN von HOOVER, CINDI A, GAFFNEY, PATRICK M

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Gene expression profiling of two related soft corals, Sinularia polydactyla and S. maxima, and their putative hybrid at different life-history stages von Hoover, Cindi A., Slattery, Marc, Marsh, Adam G.

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Tn-seq of Caulobacter crescentus under uranium stress reveals genes essential for detoxification and stress tolerance von Yung, Mimi C., Park, Dan M., Overton, K. Wesley, Blow, Matthew J., Hoover, Cindi A., Smit, John R., Murray, Sean R., Ricci, Dante P., Christen, Beat, Bowman, Grant R., Jiao, Yongqin

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Prehistoric genomes reveal the genetic foundation and cost of horse domestication von Schubert, Mikkel, Jónsson, Hákon, Chang, Dan, Der Sarkissian, Clio, Ermini, Luca, Ginolhac, Aurélien, Albrechtsen, Anders, Dupanloup, Isabelle, Foucal, Adrien, Petersen, Bent, Fumagalli, Matteo, Raghavan, Maanasa, Seguin-Orlando, Andaine, Komeliussen, Thorfinn S., Velazquez, Amhed M. V., Stenderup, Jesper, Hoover, Cindi A., Rubin, Carl-Johan, Alfarhan, Ahmed H., Alquraishi, Saleh A., Al-Rasheid, Khaled A. S., MacHugh, David E., Kalbfleisch, Ted, MacLeod, James N., Rubin, Edward M., Sicheritz-Ponten, Thomas, Andersson, Leif, Hofreiter, Michael, Marques-Bonet, Tomas, Thomas, M., Gilbert, P., Nielsen, Rasmus, Excoffier, Laurent, Willerslev, Eske, Shapiro, Beth, Orlando, Ludovic

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Amplification of TruSeq ancient DNA libraries with AccuPrime Pfx: consequences on nucleotide misincorporation and methylation patterns von Seguin-Orlando, Andaine, Hoover, Cindi A., Vasiliev, Sergei K., Ovodov, Nikolai D., Shapiro, Beth, Cooper, Alan, Rubin, Edward M., Willerslev, Eske, Orlando, Ludovic

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Appendix A. Soft-coral grid maps and sample provenances von Slattery, Marc, Haidy N. Kamel, Sridevi Ankisetty, Gochfeld, Deborah J., Hoover, Cindi A., Thacker, Robert W.

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Appendix B. Statistical analyses of soft-coral genets von Slattery, Marc, Haidy N. Kamel, Sridevi Ankisetty, Gochfeld, Deborah J., Hoover, Cindi A., Thacker, Robert W.

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Prehistoric Genomes Reveal the Genetic Foundation and Cost of Horse Domestication von Nielsen, Rasmus, Ermini, Luca, Rubin, Edward M, Raghavan, Maanasa, Dupanloup, Isabelle, Jónsson, Hákon, Chang, Dan, Ginolhac, Aurélien, Willerslev, Eske, Alquraishi, Saleh A, Andersson, Leif, Alfarhan, Ahmed H, Foucal, Adrien, Seguin-Orlando, Andaine, Macleod, James N, Schubert, Mikkel, Orlando, Ludovic, Velazquez, Amhed M. V, Sicheritz-Ponten, Thomas, Petersen, Bent, Korneliussen, Thorfinn S, Hoover, Cindi A, Hofreiter, Michael, Shapiro, Beth, Rubin, Carl-Johan, Der Sarkissian, Clio, Albrechtsen, Anders, Stenderup, Jesper, Fumagalli, Matteo, Marques-Bonet, Tomas, MacHugh, David E, Al-Rasheid, Khaled A. S, Kalbfleisch, Ted, Excoffier, Laurent, Gilbert, M. Thomas P

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MAGI: A Method for Metabolite Annotation and Gene Integration von Erbilgin, Onur, Rübel, Oliver, Louie, Katherine B, Trinh, Matthew, Raad, Markus de, Wildish, Tony, Udwary, Daniel, Hoover, Cindi, Deutsch, Samuel, Northen, Trent R, Bowen, Benjamin P

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