Annotation of functional variation in personal genomes using RegulomeDB von Boyle, Alan P, Hong, Eurie L, Hariharan, Manoj, Cheng, Yong, Schaub, Marc A, Kasowski, Maya, Karczewski, Konrad J, Park, Julie, Hitz, Benjamin C, Weng, Shuai, Cherry, J Michael, Snyder, Michael

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Resources for the Comprehensive Discovery of Functional RNA Elements von Sundararaman, Balaji, Zhan, Lijun, Blue, Steven M., Stanton, Rebecca, Elkins, Keri, Olson, Sara, Wei, Xintao, Van Nostrand, Eric L., Pratt, Gabriel A., Huelga, Stephanie C., Smalec, Brendan M., Wang, Xiaofeng, Hong, Eurie L., Davidson, Jean M., Lécuyer, Eric, Graveley, Brenton R., Yeo, Gene W.

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Clustering of 770,000 genomes reveals post-colonial population structure of North America von Han, Eunjung, Carbonetto, Peter, Curtis, Ross E., Wang, Yong, Granka, Julie M., Byrnes, Jake, Noto, Keith, Kermany, Amir R., Myres, Natalie M., Barber, Mathew J., Rand, Kristin A., Song, Shiya, Roman, Theodore, Battat, Erin, Elyashiv, Eyal, Guturu, Harendra, Hong, Eurie L., Chahine, Kenneth G., Ball, Catherine A.

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Ancestry inference using reference labeled clusters of haplotypes von Wang, Yong, Song, Shiya, Schraiber, Joshua G., Sedghifar, Alisa, Byrnes, Jake K., Turissini, David A., Hong, Eurie L., Ball, Catherine A., Noto, Keith

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YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit von Balakrishnan, Rama, Park, Julie, Karra, Kalpana, Hitz, Benjamin C, Binkley, Gail, Hong, Eurie L, Sullivan, Julie, Micklem, Gos, Cherry, J Michael

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Expanded COVID-19 phenotype definitions reveal distinct patterns of genetic association and protective effects von Roberts, Genevieve H. L., Partha, Raghavendran, Rhead, Brooke, Knight, Spencer C., Park, Danny S., Coignet, Marie V., Zhang, Miao, Berkowitz, Nathan, Turrisini, David A., Gaddis, Michael, McCurdy, Shannon R., Pavlovic, Milos, Ruiz, Luong, Sass, Chodon, Haug Baltzell, Asher K., Guturu, Harendra, Girshick, Ahna R., Ball, Catherine A., Hong, Eurie L., Rand, Kristin A.

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Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns von Christie, Karen R, Hong, Eurie L, Cherry, J. Michael

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ENCODE data at the ENCODE portal von Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Malladi, Venkat S, Strattan, J Seth, Hitz, Benjamin C, Gabdank, Idan, Narayanan, Aditi K, Ho, Marcus, Lee, Brian T, Rowe, Laurence D, Dreszer, Timothy R, Roe, Greg, Podduturi, Nikhil R, Tanaka, Forrest, Hong, Eurie L, Cherry, J Michael

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Genome-wide analysis provides genetic evidence that ACE2 influences COVID-19 risk and yields risk scores associated with severe disease von Horowitz, Julie E., Kosmicki, Jack A., Damask, Amy, Sharma, Deepika, Roberts, Genevieve H. L., Justice, Anne E., Banerjee, Nilanjana, Coignet, Marie V., Yadav, Ashish, Leader, Joseph B., Marcketta, Anthony, Park, Danny S., Lanche, Rouel, Maxwell, Evan, Knight, Spencer C., Bai, Xiaodong, Guturu, Harendra, Sun, Dylan, Baltzell, Asher, Kury, Fabricio S. P., Backman, Joshua D., Girshick, Ahna R., O’Dushlaine, Colm, McCurdy, Shannon R., Partha, Raghavendran, Mansfield, Adam J., Turissini, David A., Li, Alexander H., Zhang, Miao, Mbatchou, Joelle, Watanabe, Kyoko, Gurski, Lauren, McCarthy, Shane E., Kang, Hyun M., Dobbyn, Lee, Stahl, Eli, Verma, Anurag, Sirugo, Giorgio, Ritchie, Marylyn D., Jones, Marcus, Balasubramanian, Suganthi, Siminovitch, Katherine, Salerno, William J., Shuldiner, Alan R., Rader, Daniel J., Mirshahi, Tooraj, Locke, Adam E., Marchini, Jonathan, Overton, John D., Carey, David J., Habegger, Lukas, Cantor, Michael N., Rand, Kristin A., Hong, Eurie L., Reid, Jeffrey G., Ball, Catherine A., Baras, Aris, Abecasis, Gonçalo R., Ferreira, Manuel A. R.

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Expanded COVID-19 phenotype definitions reveal distinct patterns of genetic association and protective effects von Roberts, Genevieve H. L., Partha, Raghavendran, Rhead, Brooke, Knight, Spencer C., Park, Danny S., Coignet, Marie V., Zhang, Miao, Berkowitz, Nathan, Turrisini, David A., Gaddis, Michael, McCurdy, Shannon R., Pavlovic, Milos, Ruiz, Luong, Sass, Chodon, Haug Baltzell, Asher K., Guturu, Harendra, Girshick, Ahna R., Ball, Catherine A., Hong, Eurie L., Rand, Kristin A.

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Saccharomyces Genome Database: the genomics resource of budding yeast von Cherry, J. Michael, Hong, Eurie L., Amundsen, Craig, Balakrishnan, Rama, Binkley, Gail, Chan, Esther T., Christie, Karen R., Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Karra, Kalpana, Krieger, Cynthia J., Miyasato, Stuart R., Nash, Rob S., Park, Julie, Skrzypek, Marek S., Simison, Matt, Weng, Shuai, Wong, Edith D.

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Genetic risk factors for COVID-19 and influenza are largely distinct von Kosmicki, Jack A., Marcketta, Anthony, Sharma, Deepika, Di Gioia, Silvio Alessandro, Batista, Samantha, Yang, Xiao-Man, Tzoneva, Gannie, Martinez, Hector, Sidore, Carlo, Kessler, Michael D., Horowitz, Julie E., Roberts, Genevieve H. L., Justice, Anne E., Banerjee, Nilanjana, Coignet, Marie V., Leader, Joseph B., Park, Danny S., Lanche, Rouel, Maxwell, Evan, Knight, Spencer C., Bai, Xiaodong, Guturu, Harendra, Baltzell, Asher, Girshick, Ahna R., McCurdy, Shannon R., Partha, Raghavendran, Mansfield, Adam J., Turissini, David A., Zhang, Miao, Mbatchou, Joelle, Watanabe, Kyoko, Verma, Anurag, Sirugo, Giorgio, Ritchie, Marylyn D., Salerno, William J., Shuldiner, Alan R., Rader, Daniel J., Mirshahi, Tooraj, Marchini, Jonathan, Overton, John D., Carey, David J., Habegger, Lukas, Reid, Jeffrey G., Economides, Aris, Kyratsous, Christos, Karalis, Katia, Baum, Alina, Cantor, Michael N., Rand, Kristin A., Hong, Eurie L., Ball, Catherine A., Siminovitch, Katherine, Baras, Aris, Abecasis, Goncalo R., Ferreira, Manuel A. R.

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Calcium Ion Promotes Yeast Dmc1 Activity via Formation of Long and Fine Helical Filaments with Single-stranded DNA von Lee, Ming-Hui, Chang, Yuan-Chih, Hong, Eurie L., Grubb, Jennifer, Chang, Chia-Seng, Bishop, Douglas K., Wang, Ting-Fang

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Gene Ontology annotations at SGD: new data sources and annotation methods von Hong, Eurie L, Balakrishnan, Rama, Dong, Qing, Christie, Karen R, Park, Julie, Binkley, Gail, Costanzo, Maria C, Dwight, Selina S, Engel, Stacia R, Fisk, Dianna G, Hirschman, Jodi E, Hitz, Benjamin C, Krieger, Cynthia J, Livstone, Michael S, Miyasato, Stuart R, Nash, Robert S, Oughtred, Rose, Skrzypek, Marek S, Weng, Shuai, Wong, Edith D, Zhu, Kathy K, Dolinski, Kara, Botstein, David, Cherry, J. Michael

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COVID-19 susceptibility and severity risks in a cross-sectional survey of over 500 000 US adults von Knight, Spencer C, McCurdy, Shannon R, Rhead, Brooke, Coignet, Marie V, Park, Danny S, Roberts, Genevieve H L, Berkowitz, Nathan D, Zhang, Miao, Turissini, David, Delgado, Karen, Pavlovic, Milos, Haug Baltzell, Asher K, Guturu, Harendra, Rand, Kristin A, Girshick, Ahna R, Hong, Eurie L, Ball, Catherine A, Banda, Yambazi, Bi, Ke, Burton, Robert, Champine, Marjan, Curtis, Ross, Drokhlyansky, Abby, Elrick, Ashley, Foo, Cat, Gaddis, Michael, Gu, Jialiang, Hateley, Shannon, Harris, Heather, King, Shea, Maldonado, Christine, McCartney-Melstad, Evan, McFarland, Alexandra, Miller, Patty, Nguyen, Luong, Noto, Keith, Pei, Jingwen, Petersen, Jenna, Pew, Scott, Sass, Chodon, Schraiber, Josh, Sedghifar, Alisa, Smelter, Andrey, South, Sarah, Starr, Barry, Vaughn, Cecily, Wang, Yong

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SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata von Hitz, Benjamin C, Rowe, Laurence D, Podduturi, Nikhil R, Glick, David I, Baymuradov, Ulugbek K, Malladi, Venkat S, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Narayana, Aditi K, Onate, Kathrina C, Hilton, Jason, Ho, Marcus C, Lee, Brian T, Miyasato, Stuart R, Dreszer, Timothy R, Sloan, Cricket A, Strattan, J Seth, Tanaka, Forrest Y, Hong, Eurie L, Cherry, J Michael

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Saccharomyces Genome Database provides mutant phenotype data von Engel, Stacia R, Balakrishnan, Rama, Binkley, Gail, Christie, Karen R, Costanzo, Maria C, Dwight, Selina S, Fisk, Dianna G, Hirschman, Jodi E, Hitz, Benjamin C, Hong, Eurie L, Krieger, Cynthia J, Livstone, Michael S, Miyasato, Stuart R, Nash, Robert, Oughtred, Rose, Park, Julie, Skrzypek, Marek S, Weng, Shuai, Wong, Edith D, Dolinski, Kara, Botstein, David, Cherry, J. Michael

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Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms von Christie, Karen R., Weng, Shuai, Balakrishnan, Rama, Costanzo, Maria C., Dolinski, Kara, Dwight, Selina S., Engel, Stacia R., Feierbach, Becket, Fisk, Dianna G., Hirschman, Jodi E., Hong, Eurie L., Issel‐Tarver, Laurie, Nash, Robert, Sethuraman, Anand, Starr, Barry, Theesfeld, Chandra L., Andrada, Rey, Binkley, Gail, Dong, Qing, Lane, Christopher, Schroeder, Mark, Botstein, David, Cherry, J. Michael

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Principles of metadata organization at the ENCODE data coordination center von Hong, Eurie L, Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Malladi, Venkat S, Strattan, J Seth, Hitz, Benjamin C, Gabdank, Idan, Narayanan, Aditi K, Ho, Marcus, Lee, Brian T, Rowe, Laurence D, Dreszer, Timothy R, Roe, Greg R, Podduturi, Nikhil R, Tanaka, Forrest, Hilton, Jason A, Cherry, J Michael

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Ontology application and use at the ENCODE DCC von Malladi, Venkat S, Erickson, Drew T, Podduturi, Nikhil R, Rowe, Laurence D, Chan, Esther T, Davidson, Jean M, Hitz, Benjamin C, Ho, Marcus, Lee, Brian T, Miyasato, Stuart, Roe, Gregory R, Simison, Matt, Sloan, Cricket A, Strattan, J Seth, Tanaka, Forrest, Kent, W James, Cherry, J Michael, Hong, Eurie L

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