The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee von Ellington, M.J., Ekelund, O., Aarestrup, F.M., Canton, R., Doumith, M., Giske, C., Grundman, H., Hasman, H., Holden, M.T.G., Hopkins, K.L., Iredell, J., Kahlmeter, G., Köser, C.U., MacGowan, A., Mevius, D., Mulvey, M., Naas, T., Peto, T., Rolain, J.-M., Samuelsen, Ø., Woodford, N.

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Clinical perspectives in integrating whole-genome sequencing into the investigation of healthcare and public health outbreaks – hype or help? von Parcell, B.J., Gillespie, S.H., Pettigrew, K.A., Holden, M.T.G.

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Chlorhexidine and octenidine use, carriage of qac genes, and reduced antiseptic susceptibility in methicillin-resistant Staphylococcus aureus isolates from a healthcare network von Htun, H.L., Hon, P.Y., Holden, M.T.G., Ang, B., Chow, A.

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The widespread use of topical antimicrobials enriches for resistance in Staphylococcus aureus isolated from patients with atopic dermatitis von Harkins, C.P., McAleer, M.A., Bennett, D., McHugh, M., Fleury, O.M., Pettigrew, K.A., Oravcová, K., Parkhill, J., Proby, C.M., Dawe, R.S., Geoghegan, J.A., Irvine, A.D., Holden, M.T.G.

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Pseudomonas aeruginosa intensive care unit outbreak: winnowing of transmissions with molecular and genomic typing von Parcell, B.J., Oravcova, K., Pinheiro, M., Holden, M.T.G., Phillips, G., Turton, J.F., Gillespie, S.H.

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Investigation of two cases of Mycobacterium chelonae infection in haemato-oncology patients using whole-genome sequencing and a potential link to the hospital water supply von Inkster, T., Peters, C., Seagar, A.L., Holden, M.T.G., Laurenson, I.F.

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Genomic insights into the emergence and spread of international clones of healthcare-, community- and livestock-associated meticillin-resistant Staphylococcus aureus: Blurring of t... von Bal, A.M., Coombs, G.W., Holden, M.T.G., Lindsay, J.A., Nimmo, G.R., Tattevin, P., Skov, R.L.

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Antimicrobial resistance in atopic dermatitis: Need for an urgent rethink von Harkins, C P, Holden, M T G, Irvine, Alan D

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Rapid single-colony whole-genome sequencing of bacterial pathogens von Köser, Claudio U, Fraser, Louise J, Ioannou, Avgousta, Becq, Jennifer, Ellington, Matthew J, Holden, Matthew T G, Reuter, Sandra, Török, M Estée, Bentley, Stephen D, Parkhill, Julian, Gormley, Niall A, Smith, Geoffrey P, Peacock, Sharon J

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Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors von Bell, K.S, Sebaihia, M, Pritchard, L, Holden, M.T.G, Hyman, L.J, Holeva, M.C, Thomson, N.R, Bentley, S.D, Churcher, L.J.C, Mungall, K

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The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129 von Cerdeño‐Tárraga, A. M., Efstratiou, A., Dover, L. G., Holden, M. T. G., Pallen, M., Bentley, S. D., Besra, G. S., Churcher, C., James, K. D., De Zoysa, A., Chillingworth, T., Cronin, A., Dowd, L., Feltwell, T., Hamlin, N., Holroyd, S., Jagels, K., Moule, S., Quail, M. A., Rabbinowitsch, E., Rutherford, K. M., Thomson, N. R., Unwin, L., Whitehead, S., Barrell, B. G., Parkhill, J.

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Novel mutations in penicillin-binding protein genes in clinical Staphylococcus aureus isolates that are methicillin resistant on susceptibility testing, but lack the mec gene von Ba, Xiaoliang, Harrison, Ewan M, Edwards, Giles F, Holden, Matthew T G, Larsen, Anders Rhod, Petersen, Andreas, Skov, Robert L, Peacock, Sharon J, Parkhill, Julian, Paterson, Gavin K, Holmes, Mark A

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Genome sequence of Yersinia pestis , the causative agent of plague von Parkhill, J, Wren, B. W, Thomson, N. R, Titball, R. W, Holden, M. T. G, Prentice, M. B, Sebaihia, M, James, K. D, Churcher, C, Mungall, K. L, Baker, S, Basham, D, Bentley, S. D, Brooks, K, Cerdeño-Tárraga, A. M, Chillingworth, T, Cronin, A, Davies, R. M, Davis, P, Dougan, G, Feltwell, T, Hamlin, N, Holroyd, S, Jagels, K, Karlyshev, A. V, Leather, S, Moule, S, Oyston, P. C. F, Quail, M, Rutherford, K, Simmonds, M, Skelton, J, Stevens, K, Whitehead, S, Barrell, B. G

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Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18 von Parkhill, J, Dougan, G, James, K. D, Thomson, N. R, Pickard, D, Wain, J, Churcher, C, Mungall, K. L, Bentley, S. D, Holden, M. T. G, Sebaihia, M, Baker, S, Basham, D, Brooks, K, Chillingworth, T, Connerton, P, Cronin, A, Davis, P, Davies, R. M, Dowd, L, White, N, Farrar, J, Feltwell, T, Hamlin, N, Haque, A, Hien, T. T, Holroyd, S, Jagels, K, Krogh, A, Larsen, T. S, Leather, S, Moule, S, Ó'Gaora, P, Parry, C, Quail, M, Rutherford, K, Simmonds, M, Skelton, J, Stevens, K, Whitehead, S, Barrell, B. G

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A novel hybrid SCCmec-mecC region in Staphylococcus sciuri von Harrison, E. M., Paterson, G. K., Holden, M. T. G., Ba, X., Rolo, J., Morgan, F. J. E., Pichon, B., Kearns, A., Zadoks, R. N., Peacock, S. J., Parkhill, J., Holmes, M. A.

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The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation von Bateman, Alex, Holden, Matthew T. G., Yeats, Corin

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In vivo evolution of antimicrobial resistance in a series of Staphylococcus aureus patient isolates: the entire picture or a cautionary tale? von van Hal, Sebastiaan J, Steen, Jason A, Espedido, Björn A, Grimmond, Sean M, Cooper, Matthew A, Holden, Matthew T G, Bentley, Stephen D, Gosbell, Iain B, Jensen, Slade O

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Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus von Mcadam, P. R., Templeton, K. E., Edwards, G. F., Holden, M. T. G., Feil, E. J., Aanensen, D. M., Bargawi, H. J. A., Spratt, B. G., Bentley, S. D., Parkhill, J., Enright, M. C., Holmes, A., Girvan, E. K., Godfrey, P. A., Feldgarden, M., Kearns, A. M., Rambaut, A., Robinson, D. A., Fitzgerald, J. R.

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Burkholderia pseudomallei genome plasticity associated with genomic island variation von Tumapa, S, Holden, M T G, Vesaratchavest, M, Wuthiekanun, V, Limmathurotsakul, D, Chierakul, W, Feil, E J, Currie, B J, Day, N P J, Nierman, W C, Peacock, S J

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Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. stroseptica and characterization of virulence factors von Bell, K S, Sebaihia, M, Pritchard, L, Holden, M T G

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