Prediction of locally stable RNA secondary structures for genome-wide surveys von Hofacker, I. L., Priwitzer, B., Stadler, P. F.

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Vienna RNA secondary structure server von Hofacker, Ivo L

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Fast and Reliable Prediction of Noncoding RNAs von Washietl, Stefan, Hofacker, Ivo L., Stadler, Peter F., Frauenfelder, Hans

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Secondary Structure Prediction for Aligned RNA Sequences von Hofacker, Ivo L., Fekete, Martin, Stadler, Peter F.

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Memory efficient folding algorithms for circular RNA secondary structures von Hofacker, Ivo L., Stadler, Peter F.

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Thermodynamics of RNA–RNA binding von Mückstein, Ulrike, Tafer, Hakim, Hackermüller, Jörg, Bernhart, Stephan H., Stadler, Peter F., Hofacker, Ivo L.

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Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome von Stadler, Peter F, Lukasser, Melanie, Hüttenhofer, Alexander, Washietl, Stefan, Hofacker, Ivo L

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Local RNA base pairing probabilities in large sequences von Bernhart, Stephan H., Hofacker, Ivo L., Stadler, Peter F.

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The expansion of the metazoan microRNA repertoire von Hertel, Jana, Lindemeyer, Manuela, Missal, Kristin, Fried, Claudia, Tanzer, Andrea, Flamm, Christoph, Hofacker, Ivo L, Stadler, Peter F

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Consensus Folding of Aligned Sequences as a New Measure for the Detection of Functional RNAs by Comparative Genomics von Washietl, Stefan, Hofacker, Ivo L.

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Alignment of RNA base pairing probability matrices von Hofacker, Ivo L., Bernhart, Stephan H. F., Stadler, Peter F.

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Complete suboptimal folding of RNA and the stability of secondary structures von Wuchty, Stefan, Fontana, Walter, Hofacker, Ivo L., Schuster, Peter

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Conserved RNA secondary structures in Flaviviridae genomes von Thurner, Caroline, Witwer, Christina, Hofacker, Ivo L, Stadler, Peter F

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RNA folding at elementary step resolution von FLAMM, CHRISTOPH, FONTANA, WALTER, HOFACKER, IVO L., SCHUSTER, PETER

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Folding Kinetics of Large RNAs von Geis, Michael, Flamm, Christoph, Wolfinger, Michael T., Tanzer, Andrea, Hofacker, Ivo L., Middendorf, Martin, Mandl, Christian, Stadler, Peter F., Thurner, Caroline

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Designing Optimal siRNA Based on Target Site Accessibility von Hofacker, Ivo L., Tafer, Hakim

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Conserved RNA secondary structures in Picornaviridae genomes von Witwer, C, Rauscher, S, Hofacker, I L, Stadler, P F

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Nucleic Acid Sequence and Structure Databases von Washietl, Stefan, Hofacker, Ivo L.

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Design of multistable RNA molecules von FLAMM, CHRISTOPH, HOFACKER, IVO L., MAURER-STROH, SEBASTIAN, STADLER, PETER F., ZEHL, MARTIN

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Conserved RNA secondary structures in viral genomes: a survey von Hofacker, I.L., Stadler, P.F., Stocsits, R.R.

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