Prediction of locally stable RNA secondary structures for genome-wide surveys von Hofacker, I. L., Priwitzer, B., Stadler, P. F.

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Vienna RNA secondary structure server von Hofacker, Ivo L

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Conserved RNA secondary structures in viral genomes: a survey von Hofacker, I.L., Stadler, P.F., Stocsits, R.R.

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Stochastic pairwise alignments von Mückstein, U., Hofacker, I.L., Stadler, P.F.

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RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures von Gruber, Andreas R, Neuböck, Richard, Hofacker, Ivo L, Washietl, Stefan

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Fast folding and comparison of RNA secondary structures von Hofacker, I. L., Fontana, W., Stadler, P. F., Bonhoeffer, L. S., Tacker, M., Schuster, P.

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Structural parameters affecting the kinetics of RNA hairpin formation von Nagel, J. H. A., Flamm, C., Hofacker, I. L., Franke, K., de Smit, M. H., Schuster, P., Pleij, C. W. A.

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Automatic detection of conserved RNA structure elements in complete RNA virus genomes von Hofacker, Ivo L., Fekete, Martin, Flamm, Christoph, Huynen, Martijn A., Rauscher, Susanne, Stolorz, Paul E., Stadler, Peter F.

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Complete suboptimal folding of RNA and the stability of secondary structures von Wuchty, Stefan, Fontana, Walter, Hofacker, Ivo L., Schuster, Peter

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RNA folding at elementary step resolution von FLAMM, CHRISTOPH, FONTANA, WALTER, HOFACKER, IVO L., SCHUSTER, PETER

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Vienna RNA Websuite von Gruber, Andreas R, Lorenz, Ronny, Bernhart, Stephan H, Neuböck, Richard, Hofacker, Ivo L

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Design of multistable RNA molecules von FLAMM, CHRISTOPH, HOFACKER, IVO L., MAURER-STROH, SEBASTIAN, STADLER, PETER F., ZEHL, MARTIN

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Conserved RNA secondary structures in Picornaviridae genomes von Witwer, C, Rauscher, S, Hofacker, I L, Stadler, P F

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Nucleic Acid Sequence and Structure Databases von Washietl, Stefan, Hofacker, Ivo L.

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AREsite: a database for the comprehensive investigation of AU-rich elements von Gruber, Andreas R, Fallmann, Jörg, Kratochvill, Franz, Kovarik, Pavel, Hofacker, Ivo L

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Prediction of consensus RNA secondary structures including pseudoknots von Witwer, C., Hofacker, I.L., Stadler, P.F.

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Fast and Reliable Prediction of Noncoding RNAs von Washietl, Stefan, Hofacker, Ivo L., Stadler, Peter F., Frauenfelder, Hans

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Secondary Structure Prediction for Aligned RNA Sequences von Hofacker, Ivo L., Fekete, Martin, Stadler, Peter F.

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Exploring Protein Sequence Space Using Knowledge-based Potentials von BABAJIDE, ADERONKE, FARBER, ROBERT, HOFACKER, IVO L., INMAN, JEFF, LAPEDES, ALAN S., STADLER, PETER F.

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Memory efficient folding algorithms for circular RNA secondary structures von Hofacker, Ivo L., Stadler, Peter F.

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