Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing von Anvar, Seyed Yahya, Allard, Guy, Tseng, Elizabeth, Sheynkman, Gloria M, de Klerk, Eleonora, Vermaat, Martijn, Yin, Raymund H, Johansson, Hans E, Ariyurek, Yavuz, den Dunnen, Johan T, Turner, Stephen W, 't Hoen, Peter A C

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Drug Repositioning through Systematic Mining of Gene Coexpression Networks in Cancer von Ivliev, Alexander E, 't Hoen, Peter A C, Borisevich, Dmitrii, Nikolsky, Yuri, Sergeeva, Marina G

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Benchmarking deep learning splice prediction tools using functional splice assays von Riepe, Tabea V., Khan, Mubeen, Roosing, Susanne, Cremers, Frans P. M., 't Hoen, Peter A. C.

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The effects of low levels of dystrophin on mouse muscle function and pathology von van Putten, Maaike, Hulsker, Margriet, Nadarajah, Vishna Devi, van Heiningen, Sandra H, van Huizen, Ella, van Iterson, Maarten, Admiraal, Peter, Messemaker, Tobias, den Dunnen, Johan T, 't Hoen, Peter A C, Aartsma-Rus, Annemieke

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Strap associates with Csde1 and affects expression of select Csde1-bound transcripts von Moore, Kat S, Yagci, Nurcan, van Alphen, Floris, Meijer, Alexander B, 't Hoen, Peter A C, von Lindern, Marieke

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Transcriptional profiling and biomarker identification reveal tissue specific effects of expanded ataxin-3 in a spinocerebellar ataxia type 3 mouse model von Toonen, Lodewijk J A, Overzier, Maurice, Evers, Melvin M, Leon, Leticia G, van der Zeeuw, Sander A J, Mei, Hailiang, Kielbasa, Szymon M, Goeman, Jelle J, Hettne, Kristina M, Magnusson, Olafur Th, Poirel, Marion, Seyer, Alexandre, 't Hoen, Peter A C, van Roon-Mom, Willeke M C

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Systematic genomic and translational efficiency studies of uveal melanoma von Johnson, Chelsea Place, Kim, Ivana K, Esmaeli, Bita, Amin-Mansour, Ali, Treacy, Daniel J, Carter, Scott L, Hodis, Eran, Wagle, Nikhil, Seepo, Sara, Yu, Xiaoxing, Lane, Anne Marie, Gragoudas, Evangelos S, Vazquez, Francisca, Nickerson, Elizabeth, Cibulskis, Kristian, McKenna, Aaron, Gabriel, Stacey B, Getz, Gad, Van Allen, Eliezer M, 't Hoen, Peter A C, Garraway, Levi A, Woodman, Scott E

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Ribosome profiling uncovers selective mRNA translation associated with eIF2 phosphorylation in erythroid progenitors von Paolini, Nahuel A, Moore, Kat S, di Summa, Franca M, Fokkema, Ivo F A C, 't Hoen, Peter A C, von Lindern, Marieke

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RNA sequencing: from tag-based profiling to resolving complete transcript structure von de Klerk, Eleonora, den Dunnen, Johan T, t Hoen, Peter A. C

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Entropy and Variability: A Second Opinion by Deep Learning von Rademaker, Daniel T, Xue, Li C, 't Hoen, Peter A C, Vriend, Gert

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Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy von Doorenweerd, Nathalie, Mahfouz, Ahmed, van Putten, Maaike, Kaliyaperumal, Rajaram, t’ Hoen, Peter A. C., Hendriksen, Jos G. M., Aartsma-Rus, Annemieke M., Verschuuren, Jan J. G. M., Niks, Erik H., Reinders, Marcel J. T., Kan, Hermien E., Lelieveldt, Boudewijn P. F.

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Overactive bone morphogenetic protein signaling in heterotopic ossification and Duchenne muscular dystrophy von Shi, SongTing, de Gorter, David J. J, Hoogaars, Willem M. H, t Hoen, Peter A. C, ten Dijke, Peter

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Proteomic analysis of the dysferlin protein complex unveils its importance for sarcolemmal maintenance and integrity von de Morrée, Antoine, Hensbergen, Paul J, van Haagen, Herman H H B M, Dragan, Irina, Deelder, André M, 't Hoen, Peter A C, Frants, Rune R, van der Maarel, Silvère M

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Antisense-oligonucleotide mediated exon skipping in activin-receptor-like kinase 2: inhibiting the receptor that is overactive in fibrodysplasia ossificans progressiva von Shi, Songting, Cai, Jie, de Gorter, David J J, Sanchez-Duffhues, Gonzalo, Kemaladewi, Dwi U, Hoogaars, Willem M H, Aartsma-Rus, Annemieke, 't Hoen, Peter A C, ten Dijke, Peter

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Gateways to the FANTOM5 promoter level mammalian expression atlas von Lizio, Marina, Harshbarger, Jayson, Shimoji, Hisashi, Severin, Jessica, Kasukawa, Takeya, Sahin, Serkan, Abugessaisa, Imad, Fukuda, Shiro, Hori, Fumi, Ishikawa-Kato, Sachi, Mungall, Christopher J, Arner, Erik, Baillie, J Kenneth, Bertin, Nicolas, Bono, Hidemasa, de Hoon, Michiel, Diehl, Alexander D, Dimont, Emmanuel, Freeman, Tom C, Fujieda, Kaori, Hide, Winston, Kaliyaperumal, Rajaram, Katayama, Toshiaki, Lassmann, Timo, Meehan, Terrence F, Nishikata, Koro, Ono, Hiromasa, Rehli, Michael, Sandelin, Albin, Schultes, Erik A, 't Hoen, Peter A C, Tatum, Zuotian, Thompson, Mark, Toyoda, Tetsuro, Wright, Derek W, Daub, Carsten O, Itoh, Masayoshi, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R R, Kawaji, Hideya

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Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms von t Hoen, Peter A.C, Ariyurek, Yavuz, Thygesen, Helene H, Vreugdenhil, Erno, Vossen, Rolf H.A.M, de Menezes, Renée X, Boer, Judith M, van Ommen, Gert-Jan B, den Dunnen, Johan T

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Rare disease research workflow using multilayer networks elucidates the molecular determinants of severity in Congenital Myasthenic Syndromes von Núñez-Carpintero, Iker, Rigau, Maria, Bosio, Mattia, O’Connor, Emily, Spendiff, Sally, Azuma, Yoshiteru, Topf, Ana, Thompson, Rachel, ’t Hoen, Peter A. C., Chamova, Teodora, Tournev, Ivailo, Guergueltcheva, Velina, Laurie, Steven, Beltran, Sergi, Capella-Gutiérrez, Salvador, Cirillo, Davide, Lochmüller, Hanns, Valencia, Alfonso

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Increasing phenotypic annotation improves the diagnostic rate of exome sequencing in a rare neuromuscular disorder von Thompson, Rachel, Papakonstantinou Ntalis, Anastasios, Beltran, Sergi, Töpf, Ana, Paula Estephan, Eduardo, Polavarapu, Kiran, ’t Hoen, Peter A. C., Missier, Paolo, Lochmüller, Hanns

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Comparative mass spectrometric and immunoassay-based proteome analysis in serum of Duchenne muscular dystrophy patients von Oonk, Stijn, Spitali, Pietro, Hiller, Monika, Switzar, Linda, Dalebout, Hans, Calissano, Mattia, Lochmüller, Hanns, Aartsma-Rus, Annemieke, Hoen, Peter A. C.'t, van der Burgt, Yuri E. M.

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New methods for next generation sequencing based microRNA expression profiling von Buermans, Henk P J, Ariyurek, Yavuz, van Ommen, Gertjan, den Dunnen, Johan T, 't Hoen, Peter A C

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