HCmodelSets: An R package for specifying sets of well-fitting models in high dimensions von Hoeltgebaum, H, Battey, H

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Streaming changepoint detection for transition matrices von Plasse, J, Helfer Hoeltgebaum, H, Adams, N

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Streaming changepoint detection for transition matrices (Apr, 10.1007/s10618-021-00747-7, 2021) von Plasse, J, Hoeltgebaum, H, Adams, NM

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Inference of COVID-19 epidemiological distributions from Brazilian hospital data von Hawryluk, I, Mellan, T, Helfer Hoeltgebaum, H, Mishra, S, Parolin Schnekenberg, R, Whittaker, C, Zhu, H, Gandy, A, Flaxman, S, Bhatt, S

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Evolution and epidemic spread of SARS-CoV-2 in Brazil von Candido, Darlan S., Claro, Ingra M., de Jesus, Jaqueline G., Souza, William M., Moreira, Filipe R. R., Dellicour, Simon, Mellan, Thomas A., du Plessis, Louis, Pereira, Rafael H. M., Sales, Flavia C. S., Manuli, Erika R., Theze, Julien, Almeida, Luiz, Menezes, Mariane T., Voloch, Carolina M., Fumagalli, Marcilio J., Coletti, Thais M., Silva, Camila A. M., Ramundo, Mariana S., Amorim, Mariene R., Hoeltgebaum, Henrique H., Mishra, Swapnil, Gill, Mandev S., Carvalho, Luiz M., Buss, Lewis F., Prete Jr, Carlos A., Ashworth, Jordan, Nakaya, Helder, Peixoto, Pedro S., Brady, Oliver J., Nicholls, Samuel M., Tanuri, Amilcar, Rossi, Atila D., Braga, Carlos K., Gerber, Alexandra L., Guimaraes, Ana Paula de C., Gaburo Jr, Nelson, Alencar, Cecila Salete, Ferreira, Alessandro C. S., Lima, Cristiano X., Levi, Jose Eduardo, Granato, Celso, Ferreira, Giulia M., Francisco Jr, Ronaldo S., Granja, Fabiana, Garcia, Marcia T., Moretti, Maria Luiza, Perroud Jr, Mauricio W., Castineiras, Terezinha M. P. P., Lazari, Carolina S., Hill, Sarah C., de Souza Santos, Andreza Aruska, Simeoni, Camila L., Forato, Julia, Sposito, Andrei C., Schreiber, Angelica Z., Santos, Magnun N. N., de Sa, Camila Zolini, Souza, Renan P., Resende-Moreira, Luciana C., Teixeira, Mauro M., Hubner, Josy, Leme, Patricia A. F., Moreira, Rennan G., Nogueira, Mauricio L., Ferguson, Neil M., Costa, Silvia F., Proenca-Modena, Jose Luiz, Vasconcelos, Ana Tereza R., Bhatt, Samir, Lemey, Philippe, Wu, Chieh-Hsi, Rambaut, Andrew, Loman, Nick J., Aguiar, Renato S., Pybus, Oliver G., Sabino, Ester C., Faria, Nuno Rodrigues

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Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil von Faria, NR, Mellan, TA, Whittaker, C, Claro, IM, Candido, DDS, Mishra, S, Crispim, MAE, Sales, FC, Hawryluk, I, McCrone, JT, Hulswit, RJG, Franco, LAM, Ramundo, MS, De Jesus, JG, Andrade, PS, Coletti, TM, Ferreira, GM, Silva, CAM, Manuli, ER, Pereira, RHM, Peixoto, PS, Kraemer, MU, Gaburo, N, Camilo, CDC, Hoeltgebaum, H, Souza, WM, Rocha, EC, De Souza, LM, De Pinho, MC, Araujo, LJT, Malta, FS, De Lima, AB, Silva, JDP, Zauli, DAG, Ferreira, ACDS, Schnekenberg, RP, Laydon, DJ, Walker, PGT, Schlueter, HM, Dos Santos, ALP, Vidal, MS, Del Caro, VS, Filho, RMF, Dos Santos, HM, Aguiar, RS, Proenca-Modena, JLP, Nelson, B, Hay, JA, Monod, M, Miscouridou, X, Coupland, H, Sonabend, R, Vollmer, M, Gandy, A, Prete, CA, Nascimento, VH, Suchard, MA, Bowden, TA, Pond, SLK, Wu, C-H, Ratmann, O, Ferguson, NM, Dye, C, Loman, NJ, Lemey, P, Rambaut, A, Fraiji, NA, Carvalho, MDPSS, Pybus, OG, Flaxman, S, Bhatt, S, Sabino, EC

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Estimating the COVID-19 infection fatality ratio accounting for seroreversion using statistical modelling von Okell, L, Brazeau, NF, Verity, R, Jenks, S, Fu, H, Whittaker, C, Winskill, P, Dorigatti, I, Walker, P, Riley, S, Schnekenberg, RP, Hoeltgebaum, H, Mellan, TA, Mishra, S, Unwin, H, Watson, O, Cucunuba, Z, Baguelin, M, Whittles, L, Bhatt, S, Ghani, A, Ferguson, N

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Evolution and epidemic spread of SARS-CoV-2 in Brazil von Candido, Darlan S, Claro, Ingra M, de Jesus, Jaqueline G, Souza, William M, Moreira, Filipe RR, Dellicour, Simon, Mellan, Thomas A, du Plessis, Louis, Pereira, Rafael HM, Sales, Flavia CS, Manuli, Erika R, Thézé, Julien, Almeida, Luiz, Menezes, Mariane T, Voloch, Carolina M, Fumagalli, Marcilio J, Coletti, Thaís M, da Silva, Camila AM, Ramundo, Mariana S, Amorim, Mariene R, Hoeltgebaum, Henrique H, Mishra, Swapnil, Gill, Mandev S, Carvalho, Luiz M, Buss, Lewis F, Prete, Carlos A, Ashworth, Jordan, Nakaya, Helder I, Peixoto, Pedro S, Brady, Oliver J, Nicholls, Samuel M, Tanuri, Amilcar, Rossi, Átila D, Braga, Carlos KV, Gerber, Alexandra L, de C Guimarães, Ana Paula, Gaburo, Nelson, Alencar, Cecila Salete, Ferreira, Alessandro CS, Lima, Cristiano X, Levi, José Eduardo, Granato, Celso, Ferreira, Giulia M, Francisco, Ronaldo S, Granja, Fabiana, Garcia, Marcia T, Moretti, Maria Luiza, Perroud, Mauricio W, Castiñeiras, Terezinha MPP, Lazari, Carolina S, Hill, Sarah C, de Souza Santos, Andreza Aruska, Simeoni, Camila L, Forato, Julia, Sposito, Andrei C, Schreiber, Angelica Z, Santos, Magnun NN, de Sá, Camila Zolini, Souza, Renan P, Resende-Moreira, Luciana C, Teixeira, Mauro M, Hubner, Josy, Leme, Patricia AF, Moreira, Rennan G, Nogueira, Maurício L, Brazil-UK Centre for Arbovirus Discovery, Diagnosis, Genomics an, Ferguson, Neil M, Costa, Silvia F, Proenca-Modena, José Luiz, Vasconcelos, Ana Tereza R, Bhatt, Samir, Lemey, Philippe, Wu, Chieh-Hsi, Rambaut, Andrew, Loman, Nick J, Aguiar, Renato S, Pybus, Oliver G, Sabino, Ester C, Faria, Nuno Rodrigues

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Evolution and epidemic spread of SARS-CoV-2 in Brazil von Candido, Darlan S, Claro, Ingra M, de Jesus, Jaqueline G, Souza, William M, Moreira, Filipe R.R, Dellicour, Simon, Mellan, Thomas A, du Plessis, Louis, Pereira, Rafael H.M, Sales, Flavia C.S, Manuli, Erika R, Theze, Julien, Almeida, Luiz, Menezes, Mariane T, Voloch, Carolina M, Fumagalli, Marcilio J, Coletti, Thais M, Silva, Camila A.M, Ramundo, Mariana S, Amorim, Mariene R, Hoeltgebaum, Henrique H, Mishra, Swapnil, Gill, Mandev S, Carvalho, Luiz M, Buss, Lewis F, Prete Jr, Carlos A, Ashworth, Jordan, Nakaya, Helder, Peixoto, Pedro S, Brady, Oliver J, Nicholls, Samuel M, Tanuri, Amilcar, Rossi, Atila D, Braga, Carlos K, Gerber, Alexandra L, Guimaraes, Ana Paula de C, Gaburo Jr, Nelson, Alencar, Cecila Salete, Ferreira, Alessandro C.S, Lima, Cristiano X, Levi, Jose Eduardo, Granato, Celso, Ferreira, Giulia M, Francisco Jr, Ronaldo S, Granja, Fabiana, Garcia, Marcia T, Moretti, Maria Luiza, Perroud Jr, Mauricio W, Castineiras, Terezinha M.P.P, Lazari, Carolina S, Hill, Sarah C, de Souza Santos, Andreza Aruska, Simeoni, Camila L, Forato, Julia, Sposito, Andrei C, Schreiber, Angelica Z, Santos, Magnun N.N, de Sa, Camila Zolini, Souza, Renan P, Resende-Moreira, Luciana C, Teixeira, Mauro M, Hubner, Josy, Leme, Patricia A.F, Moreira, Rennan G, Nogueira, Mauricio L, Ferguson, Neil M, Costa, Silvia F, Proenca-Modena, Jose Luiz, Vasconcelos, Ana Tereza R, Bhatt, Samir, Lemey, Philippe, Wu, Chieh-Hsi, Rambaut, Andrew, Loman, Nick J, Aguiar, Renato S, Pybus, Oliver G, Sabino, Ester C, Faria, Nuno Rodrigues

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Evolution and epidemic spread of SARS-CoV-2 in Brazil von Candido, DS, Claro, IM, De Jesus, JG, Souza, WM, Moreira, FRR, Dellicour, S, Mellan, TA, Du Plessis, L, Pereira, RHM, Sales, FCS, Manuli, ER, Theze, J, Almeida, L, Menezes, MT, Voloch, CM, Fumagalli, MJ, Coletti, TM, Silva, CAM, Ramundo, MS, Amorim, MR, Hoeltgebaum, HH, Mishra, S, Gill, MS, Carvalho, LM, Buss, LF, Prete Jr, CA, Ashworth, J, Nakaya, H, Peixoto, PS, Brady, OJ, Nicholls, SM, Tanuri, A, Rossi, AD, Braga, CK, Gerber, AL, Guimaraes, APDC, Gaburo Jr, N, Alencar, CS, Ferreira, ACS, Lima, CX, Levi, JE, Granato, C, Ferreira, GM, Francisco Jr, RS, Granja, F, Garcia, MT, Moretti, ML, Perroud Jr, MW, Castineiras, TMPP, Lazari, CS, Hill, SC, De Souza Santos, AA, Simeoni, CL, Forato, J, Sposito, AC, Schreiber, AZ, Santos, MNN, De Sa, CZ, Souza, RP, Resende-Moreira, LC, Teixeira, MM, Hubner, J, Leme, PAF, Moreira, RG, Nogueira, ML, Ferguson, NM, Costa, SF, Proenca-Modena, JL, Vasconcelos, ATR, Bhatt, S, Lemey, P, Wu, C-H, Rambaut, A, Loman, NJ, Aguiar, RS, Pybus, OG, Sabino, EC, Faria, NR

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Estimation, forecasting and anomaly detection for nonstationary streams using adaptive estimation von Helfer Hoeltgebaum, H, Adams, N, Fernandes, C

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Gaussian process nowcasting: application to COVID-19 mortality reporting von Hawryluk, I, Hoeltgebaum, H, Mishra, S, Miscouridou, X, Schnekenberg, RP, Whittaker, C, Vollmer, M, Flaxman, S, Bhatt, S, Mellan, TA

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Inference of COVID-19 epidemiological distributions from Brazilian hospital data von Hawryluk, Iwona, Mellan, Thomas A, Hoeltgebaum, Henrique H, Mishra, Swapnil, Schnekenberg, Ricardo P, Whittaker, Charles, Zhu, Harrison, Gandy, Axel, Donnelly, Christl A, Flaxman, Seth, Bhatt, Samir

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Report 21: Estimating COVID-19 cases and reproduction number in Brazil von Mellan, T, Hoeltgebaum, H, Mishra, S, Whittaker, C, Schnekenberg, R, Gandy, A, Unwin, H, Vollmer, M, Coupland, H, Hawryluk, I, Rodrigues Faria, N, Vesga, J, Zhu, H, Hutchinson, M, Ratmann, O, Monod, M, Ainslie, K, Baguelin, M, Bhatia, S, Boonyasiri, A, Brazeau, N, Charles, G, Cooper, L, Cucunuba Perez, Z, Cuomo-Dannenburg, G, Dighe, A, Djaafara, A, Eaton, J, Van Elsland, S, Fitzjohn, R, Fraser, K, Gaythorpe, K, Green, W, Hayes, S, Imai, N, Jeffrey, B, Knock, E, Laydon, D, Lees, J, Mangal, T, Mousa, A, Nedjati Gilani, G, Nouvellet, P, Olivera Mesa, D, Parag, K, Pickles, M, Thompson, H, Verity, R, Walters, C, Wang, H, Wang, Y, Watson, O, Whittles, L, Xi, X, Okell, L, Dorigatti, I, Walker, P, Ghani, A, Riley, S, Ferguson, N, Donnelly, C, Flaxman, S, Bhatt, S

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Inference of COVID-19 epidemiological distributions from Brazilian hospital data von Hawryluk, Iwona, Mellan, Thomas A, Hoeltgebaum, Henrique H, Mishra, Swapnil, Schnekenberg, Ricardo P, Whittaker, Charles, Harrison, Zhu, Gandy, Axel, Donnelly, Christl A, Flaxman, Seth, Bhatt, Samir

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Data from: Evolution and epidemic spread of SARS-CoV-2 in Brazil von Candido, Darlan S., Claro, Ingra M., De Jesus, Jaqueline G., Souza, William M., Moreira, Filipe R. R., Dellicour, Simon, Mellan, Thomas A., Du Plessis, Louis, Pereira, Rafael H. M., Sales, Flavia C. S., Manuli, Erika R., Thézé, Julien, Almeida, Luiz, Menezes, Mariane T., Voloch, Carolina M., Fumagalli, Marcilio J., Coletti, Thaís M., Da Silva, Camila A. M., Ramundo, Mariana S., Amorim, Mariene R., Hoeltgebaum, Henrique H., Mishra, Swapnil, Gill, Mandev S., Carvalho, Luiz M., Buss, Lewis F., Prete, Carlos A., Ashworth, Jordan, Nakaya, Helder I., Peixoto, Pedro S., Brady, Oliver J., Nicholls, Samuel M., Tanuri, Amilcar, Rossi, Átila D., Braga, Carlos K.V., Gerber, Alexandra L., De C. Guimarães, Ana Paula, Gaburo, Nelson, Alencar, Cecila Salete, Ferreira, Alessandro C.S., Lima, Cristiano X., Levi, José Eduardo, Granato, Celso, Ferreira, Giulia M., Francisco, Ronaldo S., Granja, Fabiana, Garcia, Marcia T., Moretti, Maria Luiza, Perroud, Mauricio W., Castiñeiras, Terezinha M. P. P., Lazari, Carolina S., Hill, Sarah C., De Souza Santos, Andreza Aruska, Simeoni, Camila L., Forato, Julia, Sposito, Andrei C., Schreiber, Angelica Z., Santos, Magnun N. N., De Sá, Camila Zolini, Souza, Renan P., Resende-Moreira, Luciana C., Teixeira, Mauro M., Hubner, Josy, Leme, Patricia A. F., Moreira, Rennan G, Nogueira, Maurício L., Ferguson, Neil M, Costa, Silvia F., Proenca-Modena, José Luiz, Vasconcelos, Ana Tereza R., Bhatt, Samir, Lemey, Philippe, Wu, Chieh-Hsi, Rambaut, Andrew, Loman, Nick J., Aguiar, Renato S., Pybus, Oliver G., Sabino, Ester C., Faria, Nuno R.

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Estimating the COVID-19 infection fatality ratio accounting for seroreversion using statistical modelling von Brazeau, Nicholas F., Verity, Robert, Jenks, Sara, Fu, Han, Whittaker, Charles, Winskill, Peter, Dorigatti, Ilaria, Walker, Patrick G. T., Riley, Steven, Schnekenberg, Ricardo P., Hoeltgebaum, Henrique, Mellan, Thomas A., Mishra, Swapnil, Unwin, H. Juliette T., Watson, Oliver J., Cucunubá, Zulma M., Baguelin, Marc, Whittles, Lilith, Bhatt, Samir, Ghani, Azra C., Ferguson, Neil M., Okell, Lucy C.

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Trace metal levels in serum and urine of a population in southern Brazil von Rocha, G.H.O., Steinbach, C., Munhoz, J.R., Madia, M.A.O., Faria, J.K., Hoeltgebaum, D., Barbosa, F., Batista, B.L., Souza, V.C.O., Nerilo, S.B., Bando, E., Mossini, S.A.G., Nishiyama, P.

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Estimating the COVID-19 infection fatality ratio accounting for seroreversion using statistical modelling von Brazeau, Nicholas F, Verity, Robert, Jenks, Sara, Fu, Han, Whittaker, Charles, Winskill, Peter, Dorigatti, Ilaria, Walker, Patrick GT, Riley, Steven, Schnekenberg, Ricardo P, Hoeltgebaum, Henrique, Mellan, Thomas A, Mishra, Swapnil, Unwin, H Juliette T, Watson, Oliver J, Cucunubá, Zulma M, Baguelin, Marc, Whittles, Lilith, Bhatt, Samir, Ghani, Azra C, Ferguson, Neil M, Okell, Lucy C

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