A DEMETER-like DNA demethylase governs tomato fruit ripening von Liu, Ruie, How-Kit, Alexandre, Stammitti, Linda, Teyssier, Emeline, Rolin, Dominique, Mortain-Bertrand, Anne, Halle, Stefanie, Liu, Mingchun, Kong, Junhua, Wu, Chaoqun, Degraeve-Guibault, Charlotte, Chapman, Natalie H., Maucourt, Mickael, Hodgman, T. Charlie, Tost, Jörg, Bouzayen, Mondher, Hong, Yiguo, Seymour, Graham B., Giovannoni, James J., Gallusci, Philippe

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An Integrative Systems Perspective on Plant Phosphate Research von Ajmera, Ishan, Hodgman, T Charlie, Lu, Chungui

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Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate von Giri, Jitender, Bhosale, Rahul, Huang, Guoqiang, Pandey, Bipin K., Parker, Helen, Zappala, Susan, Yang, Jing, Dievart, Anne, Bureau, Charlotte, Ljung, Karin, Price, Adam, Rose, Terry, Larrieu, Antoine, Mairhofer, Stefan, Sturrock, Craig J., White, Philip, Dupuy, Lionel, Hawkesford, Malcolm, Perin, Christophe, Liang, Wanqi, Peret, Benjamin, Hodgman, Charlie T., Lynch, Jonathan, Wissuwa, Matthias, Zhang, Dabing, Pridmore, Tony, Mooney, Sacha J., Guiderdoni, Emmanuel, Swarup, Ranjan, Bennett, Malcolm J.

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Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism von Band, Leah R, Wells, Darren M, Larrieu, Antoine, Sun, Jianyong, Middleton, Alistair M, French, Andrew P, Brunoud, Géraldine, Sato, Ethel Mendocilla, Wilson, Michael H, Péret, Benjamin, Oliva, Marina, Swarup, Ranjan, Sairanen, Ilkka, Parry, Geraint, Ljung, Karin, Beeckman, Tom, Garibaldi, Jonathan M, Estelle, Mark, Owen, Markus R, Vissenberg, Kris, Hodgman, T. Charlie, Pridmore, Tony P, King, John R, Vernoux, Teva, Bennett, Malcolm J

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The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana von Voß, Ute, Wilson, Michael H., Kenobi, Kim, Gould, Peter D., Robertson, Fiona C., Peer, Wendy A., Lucas, Mikaël, Swarup, Kamal, Casimiro, Ilda, Holman, Tara J., Wells, Darren M., Péret, Benjamin, Goh, Tatsuaki, Fukaki, Hidehiro, Hodgman, T. Charlie, Laplaze, Laurent, Halliday, Karen J., Ljung, Karin, Murphy, Angus S., Hall, Anthony J., Webb, Alex A. R., Bennett, Malcolm J.

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Integration of hormonal signaling networks and mobile microRNAs is required for vascular patterning in Arabidopsis roots von Muraro, Daniele, Mellor, Nathan, Pound, Michael P., Help, Hanna, Lucas, Mikaël, Chopard, Jérôme, Byrne, Helen M., Godin, Christophe, Hodgman, T. Charlie, King, John R., Pridmore, Tony P., Helariutta, Ykä, Bennett, Malcolm J., Bishopp, Anthony

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Systems Analysis of Auxin Transport in the Arabidopsis Root Apex von Band, Leah R., Wells, Darren M., Fozard, John A., Ghetiu, Teodor, French, Andrew P., Pound, Michael P., Wilson, Michael H., Yu, Lei, Li, Wenda, Hijazi, Hussein I., Oh, Jaesung, Pearce, Simon P., Perez-Amador, Miguel A., Yun, Jeonga, Kramer, Eric, Alonso, Jose M., Godin, Christophe, Vernoux, Teva, Hodgman, T. Charlie, Pridmore, Tony P., Swarup, Ranjan, King, John R., Bennett, Malcolm J.

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Growth-induced hormone dilution can explain the dynamics of plant root cell elongation von Band, Leah R., Úbeda-Tomás, Susana, Dyson, Rosemary J., Middleton, Alistair M., Hodgman, T. Charlie, Owen, Markus R., Jensen, Oliver E., Bennett, Malcolm J., King, John R.

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Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending von Dyson, Rosemary J, Vizcay‐Barrena, Gema, Band, Leah R, Fernandes, Anwesha N, French, Andrew P, Fozard, John A, Hodgman, T. Charlie, Kenobi, Kim, Pridmore, Tony P, Stout, Michael, Wells, Darren M, Wilson, Michael H, Bennett, Malcolm J, Jensen, Oliver E

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Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data von Levitsky, Victor G, Kulakovskiy, Ivan V, Ershov, Nikita I, Oshchepkov, Dmitry Yu, Makeev, Vsevolod J, Hodgman, T C, Merkulova, Tatyana I

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The successful application of systems approaches in plant biology von Hodgman, T.C., Ajmera, I.

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Mitochondrial phosphoenolpyruvate carboxykinase (PEPCK-M) and serine biosynthetic pathway genes are co-ordinately increased during anabolic agent-induced skeletal muscle growth von Brown, D. M., Williams, H., Ryan, K. J. P., Wilson, T. L., Daniel, Z. C. T. R., Mareko, M. H. D., Emes, R. D., Harris, D. W., Jones, S., Wattis, J. A. D., Dryden, I. L., Hodgman, T. C., Brameld, J. M., Parr, T.

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Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions von Levitsky, Victor G, Ignatieva, Elena V, Ananko, Elena A, Turnaev, Igor I, Merkulova, Tatyana I, Kolchanov, Nikolay A, Hodgman, T C

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A methodology for elucidating regulatory mechanisms leading to changes in lipid profiles von Casbas Pinto, Ferran, Ravipati, Srinivarao, Barrett, David A., Hodgman, T. Charles

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Mathematical simulation and analysis of cellular metabolism and regulation von Goryanin, I, Hodgman, T C, Selkov, E

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Erratum to: A methodology for elucidating regulatory mechanisms leading to changes in lipid profiles von Pinto, Ferran Casbas, Ravipati, Srinivasarao, Barrett, David A., Hodgman, T. Charles

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Author Correction: Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate von Giri, Jitender, Bhosale, Rahul, Huang, Guoqiang, Pandey, Bipin K., Parker, Helen, Zappala, Susan, Yang, Jing, Dievart, Anne, Bureau, Charlotte, Ljung, Karin, Price, Adam, Rose, Terry, Larrieu, Antoine, Mairhofer, Stefan, Sturrock, Craig J., White, Philip, Dupuy, Lionel, Hawkesford, Malcolm, Perin, Christophe, Liang, Wanqi, Peret, Benjamin, Hodgman, Charlie T., Lynch, Jonathan, Wissuwa, Matthias, Zhang, Dabing, Pridmore, Tony, Mooney, Sacha J., Guiderdoni, Emmanuel, Swarup, Ranjan, Bennett, Malcolm J.

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Characterizing proteolytic cleavage site activity using bio-basis function neural networks von Thomson, Rebecca, Hodgman, T. Charles, Yang, Zheng Rong, Doyle, Austin K.

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Regulatory feedback response mechanisms to phosphate starvation in rice von Ajmera, Ishan, Shi, Jing, Giri, Jitender, Wu, Ping, Stekel, Dov J., Lu, Chungui, Hodgman, T. Charlie

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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models von HUCKA, M, FINNEY, A, SAURO, H. M, BOLOURI, H, DOYLE, J. C, KITANO, H

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